Corrected Linkage of Prediction Tools to Prioritization (#12)

* linked rules for prediction to input of prioritization
ylab-hi · Feb 14, 2024 · 2928171 · 2928171
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,6 +5,12 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.1.6] - 2024-02-13
+
+### Fix 
+
+- linked rules for prediction of binding affinities and immunogenicity to input of prioritization
+
 
 ## [0.1.5] - 2024-02-13
 

diff --git a/workflow/rules/prioritization.smk b/workflow/rules/prioritization.smk
@@ -36,7 +36,9 @@ rule priorization:
     mhcII=get_mhcII,
     peptide="resources/refs/peptide.fasta",
     annotation="resources/refs/genome_tmp.gtf",
-    counts="results/{sample}/quantification/allcounts.txt"
+    counts="results/{sample}/quantification/allcounts.txt",
+    mhcI_ba="workflow/scripts/mhc_i/",
+    mhcI_im="workflow/scripts/immunogenicity/"
   output:
     directory("results/{sample}/prioritization/"),
   message: