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Pv c interface #91

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Pv c interface #91

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pnvaidya
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@pnvaidya pnvaidya commented Apr 2, 2018

Added support for c/c++i interface for SmithWaterman and PairHMM.

@Kmannth
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Kmannth commented Sep 24, 2020

I tested this pull request this week.

There is issue with linking the C test aplications presently. This is a good start but need more work before it can land.

@@ -0,0 +1,19 @@
CC = gcc
CFLAGS= -O3 -std=c++11
SHARED_LIBRARIES = -L../../../build/native -lgkl_pairhmm_c -lstdc++
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This Makefile is not sufficent to link the application more work is needed.

It seem a header file is needed to use gkl_pairhmm_c

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