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v0.9.0

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@martinghunt martinghunt released this 19 Oct 14:17
  • panel data is now handled differently. Please check the documentation for how to install mykrobe panel data.
  • new lineage calling model added
  • updated TB lineage calling to use Chiner-Oms 2020 lineage scheme
  • new Shigella sonnei panel added from Hawkey 2020
  • app supports drag + drop more than one file (useful for paired FASTQ files)
  • mykrobe genotype removed. Same functionality is now available from mykrobe predict
  • Fix report so amino acid changes to "X" are now reported as the actual amino acid change (eg H445X is now something like H445Y)
  • various other small changes, including tidying up logging to terminal