Commits on Jun 7, 2024

1. fix/feat: various, including ecFVA, enzymeUsage, constrainEnzConcs, c… …

   …onstrainFluxData (#382)
   
   * fix: getECfromDatabase correct input parameter doc
   
   * feat: makeEcModel error if none of proteins match
   
   * fix: getStandardKcat not remove if real enzyme
   
   * style: various
   
   * todo: refactor fuzzyKcatMatching to use regexprep
   
   * fix: calculateFfactor handle protData multi conds
   
   * fix getStandardKcat
   
   * feat: setKcatForReactions allows multiple kcat as input
   
   * feat: reportEnzymeUsage if enzyme cat. more rxns
   
   * chore: updateGECKOdoc
   
   * fix: reportEnzymeUsage correct percUsage
   
   * fix: constrainFluxData (-)1000 constraints
   
   * fix: ecFVA correct swapped rev fluxes
   
   * fix: reportEnzymeUsage highUsage split isozymes
   
   * refactor: fuzzyKcatMatching use regexprep
   
   * fix: plotEcFVA cdfplot and only plot non-zero rxns
   
   * feat: constrainEnzConcs can remove enzConstraints
   
   * chore: rerun tutorials
   
   * fix: getStandardKcat for light ecModels
   
   * fix: constrainEnzConcs remove enz constraints

   

   edkerk authored Jun 7, 2024
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