Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add browser table release changelog entry #166

Merged
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
28 changes: 28 additions & 0 deletions content/changelog/2024-08-release-gnomad-browser-tables.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
---
title: Release gnomAD browser tables
date: 2024-08-29
order: 1
---

The Hail Tables that underlie the gnomAD browser are now available for public use. These tables closely mirror the structure of the browser, enabling users familiar with the gene and variant pages to easily access the full set of underlying data in a format consistent with the browser's organization.

For more information about these tables, please refer to our [help text](http://gnomad.broadinstitute.org/help/v4-browser-hts) on the browser release tables.

To download these tables, visit our [downloads page](http://gnomad.broadinstitute.org/downloads#v4-browser-tables).

<!-- end_excerpt -->

**Three tables are now available:**

- gnomAD v4.1 browser variants Hail Table
- GRCh38 browser gene models Hail Table
- GRCh37 browser gene models Hail Table

### browser variants Hail Table

The browser variant table consolidates data from the gnomAD [exome](https://gnomad.broadinstitute.org/downloads#v4-variants), [genome](https://gnomad.broadinstitute.org/downloads#v4-variants), and [joint frequency](https://gnomad.broadinstitute.org/downloads#v4-joint-freq-stats) releases into a single, unified table. Frequency information is stored as a dictionary, and the key-value pairs allow for easy access to specific frequencies.

### GRCh38/GRCh37 Gene Models Hail Tables

The gene models tables aggregate relevant information from multiple sources into a single table. For each gene, data is included from GENCODE, HGNC, and MANE transcripts. Information from GTEx, and various gnomAD secondary analyses are available in the GRCh37 table but are not yet available in the GRCh38 table.

Loading