1.2.5

• updated numpy bool to bool_ to be compatible with latest versions of NumPy

1.2.4

• additional bug fix to invocation of MetaBAT v1 and v2

1.2.3

• bug fix with invocation of MetaBAT

1.2.2

• added option to specify random seed
• allow UniteM to continue even if a binning method (namely, MaxBin) finds no bins

1.2.0

• changed appending of prefix so it doesn't add an underscore; updated default prefix to "bin_"

1.1.0

• Updated UniteM to include HMMs from closely related protein families to ensure accurate annotation of marker genes
• Added a keep_intermediate flag to the profile command to retain intermediate gene calling results

1.0.4

• better handling of genomes that fail with Prodigal or HMMER
• make use of previously calculated results for calling genes and identifying marker genes

1.0.3

• fixed minor bug with progress indicator for identifying Pfam and TIGRfam marker genes

1.0.2

• updated setup.py to find all internal packages and indicate NumPy as a dependency

1.0.0

• initial release using marker genes identified across GTDB representative genomes
• marker genes are identified using Prodigal and HMMER, and directly used to estimate completeness and contamination for ensemble binning
• as of this release, CheckM is no longer used to estimate genome completeness and contamination