v0.1.14

Commits

• 6f725e9: Add more installation instructions to the readme (Oleg Sivokon)
• bb18b45: update workflow and dataframes.py (Candace Makeda Moore, MD)
• 9152a5c: Use global values (PatriceJada)
• 349b983: Move common values to the top (PatriceJada)
• f1b5428: Update test_cleanx.py (PatriceJada)
• e9bc5bc: Update medical-professionals.rst (andrew-f-murphy)
• 0fa95b9: Update README.md (andrew-f-murphy)
• 2ae2c1a: Update README.md (andrew-f-murphy)
• 37269a2: fix zero_to_twofivefive_simplest_norming function (Candace Makeda Moore, MD)
• c41e509: fix steps normalization bug (Candace Makeda Moore, MD)
• 82f3b72: [fix] rescale_range_from_histogram_low_end (Oleg Sivokon)
• 32c73af: add explanation on fixed normalize function (Candace Makeda Moore, MD)
• 15e5f41: Port changes from image_functions to steps, fix failing test (Oleg Sivokon)
• 8c3edbe: add explanation on fixed normalize function (Candace Makeda Moore, MD)
• db06148: Try to make builds faster (Oleg Sivokon)
• 43abb49: Try different solver (Oleg Sivokon)
• 779aef0: Some info for bug report (Oleg Sivokon)
• a3f65ca: Remove the alternative solver (doesn't work anyways) (Oleg Sivokon)
• 789eb8d: Let's see if we can get rid of the defaults channel (Oleg Sivokon)
• 1f45dc8: add patrice as author (Candace Makeda Moore, MD)
• b4d07a3: misplaced file in bias_not (Candace Makeda Moore, MD)
• cf07e29: Replace PNG logo with SVG one (Oleg Sivokon)
• 4671688: Try changing text color based on color scheme (Oleg Sivokon)
• 197740e: linted new helper function for inverting (Candace Makeda Moore, MD)
• dcb3e82: step for inverting all images (Candace Makeda Moore, MD)
• 03685bd: add documentation for make_inverted (Candace Makeda Moore, MD)
• b6c7233: Set strict version requirements for dependencies in Lunux Py3.8 (wvxvw)
• 61e7d94: new compare function with hash (Candace Makeda Moore, MD)
• 8f0ad27: updated for_medical_people notebook (Candace Makeda Moore, MD)
• d2f5773: update biass_not throw duplicates_note out (Candace Makeda Moore, MD)
• c3e41e6: update duplicates-function in no_classes_workflow_example (Candace Makeda Moore, MD)
• 66921ea: add auto dataset download (Candace Makeda Moore, MD)
• 2edeeb3: add no_classes_workflow update male folder explanation (Candace Makeda Moore, MD)
• 5b1dd78: Add files via upload (andrew-f-murphy)
• 943817e: rename Andrew version (Candace Makeda Moore, MD)
• a686c8d: Prepare to publish new version (wvxvw)
• c9bc95c: [fix] Let's see if we can publish w/o anaconda package (wvxvw)

v0.0.15

Commits

• ab660b4: final relint? (Candace Makeda Moore, MD)
• 80490c9: relint again (Candace Makeda Moore, MD)
• 7a6fb58: relint (Candace Makeda Moore, MD)
• caab80d: [fix] infinite loop in image comparison test (Oleg Sivokon)
• 2dfad94: Try rebuilding documentation specifying correct version (Oleg Sivokon)
• fc57d08: [fix] Wrong kind of checkout for documentation (Oleg Sivokon)
• d0d3587: temporary (Candace Makeda Moore, MD)
• 3e2c38a: Remove offending print (Oleg Sivokon)
• 678abcf: more fixing notebooks (Candace Makeda Moore, MD)
• 7a91266: Prevent matplitlib interactive ui from appearing during test (Oleg Sivokon)
• 0e93db3: Restore accidentally destroyed documentation (Oleg Sivokon)
• 1710916: Remove inherited Exception members from documentation (Oleg Sivokon) #34
• 3a58149: [fix] Minor fixes in documentation + adding IPython refs (Oleg Sivokon) #34
• 95e8105: More documentation for DICOM adapters (Oleg Sivokon) #34
• aa49d6b: minor changes to readme (Candace Makeda Moore, MD)
• 7afdc8d: special example race notebook (Candace Makeda Moore, MD)
• b8b9dce: cosmetic notebook changes (Candace Makeda Moore, MD)
• 78ed914: another notebook note (Candace Makeda Moore, MD)
• d777064: test new badges (Candace Makeda Moore, MD)
• cf14697: again (Candace Makeda Moore, MD)
• e50a0a8: take away anaconda version for now (Candace Makeda Moore, MD)
• de96742: change contact to discussions (Candace Makeda Moore, MD)
• c97982d: [fix] Accidentally removed the code to upload packages to Anaconda (Oleg Sivokon)
• 05f5447: [fix] Remove unnecessary documentation helpers, rename source dir (Oleg Sivokon)
• 9b7bbf8: new release on badges (Candace Makeda Moore, MD)
• be644e4: [fix] Add setup.py command to upload to Anaconda and use it in CI (Oleg Sivokon)
• 4d94c47: Move paper and related files into its own directory (Oleg Sivokon)
• f88ae88: Change links to badges in README (Oleg Sivokon)
• e63efbf: Removed duplicate license (Oleg Sivokon)
• e2d3bf2: add lisence copy to paper folder (Candace Makeda Moore, MD)
• d412635: Add some tables to the README (Oleg Sivokon)
• 7780ec5: [fix] Try different table formatting (Oleg Sivokon)
• 8acb554: [wip] Paths in notebooks (Candace Makeda Moore, MD)
• afce42c: change directory paths (Candace Makeda Moore, MD)
• ed5b325: Add some get started examples (Oleg Sivokon)
• 3e2bebe: [fix] Added the fix for missing old Tesseract (Oleg Sivokon)
• 895493c: Renamed LICENSE_copy to LICENSE (Oleg Sivokon)
• abeda6e: [fix] subprocess throws different errors if it cannot find an executable (Oleg Sivokon)
• 83062bc: for improved workbook (Candace Makeda Moore, MD)
• 3554267: fix duplicates notebook (Candace Makeda Moore, MD)
• 3cf82a4: Split CLI code into submodules (Oleg Sivokon)
• 92d7381: Add rip_out_jpgs to DICOM readers (Oleg Sivokon)
• 2b3bfc5: Add test for image extraction, closes #40 (Oleg Sivokon)
• bc59336: [fix] PEP8 (Oleg Sivokon)
• 93cca3e: Update README to reflect the CLI changes (Oleg Sivokon)
• bcbd6cb: Split show_images_in_df into two functions (Oleg Sivokon)
• 04c938a: Add test for find_close_images (Oleg Sivokon)
• f6a28fd: [fix] Try to do shell expansion. May be helpful on Windows (Oleg Sivokon)
• 7143d8f: intermittant changes (Candace Makeda Moore, MD)
• d0180da: update notebooks1 (Candace Makeda Moore, MD)
• 88bd2d4: futher update notebooks (Candace Makeda Moore, MD)
• a9bc057: fix readme (Candace Makeda Moore, MD)
• 3dbee6a: another cosmetic readme change (Candace Makeda Moore, MD)
• 787ca99: readme (Candace Makeda Moore, MD)
• 3b1a1a0: updating readme (Candace Makeda Moore, MD)
• be39c7f: readmefixes badges (Candace Makeda Moore, MD)
• f2cfbb5: binder changes (Candace Makeda Moore, MD)
• 51006ec: update binder notebook (Candace Makeda Moore, MD)
• d05dd6e: more binder updates (Candace Makeda Moore, MD)
• 9d39716: Add code and CI job to generate conda environment files (Oleg Sivokon)
• 4b70a9a: Reduce verbosity in conda installs (Oleg Sivokon)
• 0101040: [fix] Windows slashes in path (Oleg Sivokon)
• b9f3375: Add Developer's Guide (Oleg Sivokon)
• 9e29304: Add medical professional docs to the rest of the docs (Oleg Sivokon)
• b390cc1: Update minor version of setup-conda due to CVE (Oleg Sivokon)
• 187b33d: ignore DS_Store (Patrice Jada)
• 37bf117: Move logo file to home dir (Patrice Jada)
• 8d26658: Reorganize README.md landing page (Patrice Jada)
• a0ec823: Note about Python 3.10 not being tested yet. (Oleg Sivokon)
• b494c4d: [fix] Documentation about Anaconda development workflow (Oleg Sivokon)
• 5b462c6: [fix] Prevent conda from randomly updating Python version (Oleg Sivokon)
• 9bb14bb: new image quality functions (Candace Makeda Moore, MD)
• aed6ddc: Added back changes from .gitignore (Candace Makeda Moore, MD)
• 4824fb7: fixtest code and linting (Candace Makeda Moore, MD)
• e02429d: relint (Candace Makeda Moore, MD)
• 6a6215b: image_functions fix histofunct (Candace Makeda Moore, MD)
• b718c4f: update init.py with new functions (Candace Makeda Moore, MD)
• 3786364: update init.py with new functions (Candace Makeda Moore, MD)
• 11e93a1: fix testing output (Candace Makeda Moore, MD)
• f4d7516: update __fix testing again (Candace Makeda Moore, MD)
• 0685649: fix testing output, by temporarily not testing image_to_hist (Candace Makeda Moore, MD)
• d479c5f: Restore the header from README (Oleg Sivokon)
• 2979ce9: hjfk unscrewing up readme (Candace Makeda Moore, MD)
• cac13f8: still fixing readme mess (Candace Makeda Moore, MD)
• fb13ac0: still fixing readme mess (Candace Makeda Moore, MD)
• b90b6de: still fixing readme mess (Candace Makeda Moore, MD)
• c535ba5: still fixing readme mess (Candace Makeda Moore, MD)
• 5915776: still fixing readme (Candace Makeda Moore, MD)
• aefe5f9: again (Candace Makeda Moore, MD)
• db2ed8b: fixes readme (Candace Makeda Moore, MD)
• 9ecd91e: more readme fixes (Candace Makeda Moore, MD)
• 58e2072: more readme fixes (Candace Makeda Moore, MD)
• a022b7b: more readme fixes (Candace Makeda Moore, MD)
• 396df1b: more readme fixes, again (Candace Makeda Moore, MD)
• 581157a: more readme fixes (Candace Makeda Moore, MD)
• 3f3d82d: more readme fixes, again (Candace Makeda Moore, MD)
• de360c7: more readme fixes, again2 (Candace Makeda Moore, MD)
• 74bc63f: more readme fixes, again3 (Candace Makeda Moore, MD)
• 777b3f0: badges fix (Candace Makeda Moore, MD)
• 8f8e6ad: add salting step (Candace Makeda Moore, MD)
• 86bd39d: lint salting step (Candace Makeda Moore, MD)
• 51bb5e8: fix salt with returning 2 values (Candace Makeda Moore, MD)
• b26c536: more image augmenting steps for pipeline (Candace Makeda Moore, MD)
• 569a0a2: linting new steps for pipeline (Candace Makeda Moore, MD)
• 4c207cf: add testing on new steps (Candace Makeda Moore, MD)
• 090285d: lint add testing on new steps (Candace Makeda Moore, MD)
• ae69ef0: add testing on new steps,linted and init fixed (Candace Makeda Moore, MD)
• 965e8c1: remove salt function (Candace Makeda Moore, MD)
• 27e365b: [fix] New steps missing pickle helpers (Oleg Sivokon)
• 6853e2a: lint oleg's pickle fixes (Candace Makeda Moore, MD)
• 6905b61: fix oleg's pickle and tests (Candace Makeda Moore, MD)
• 4d03864: lint oleg's pickle fixes again (Candace Makeda Moore, MD)
• 978e391: fix oleg's pickle and tests, refix (Candace Makeda Moore, MD)
• 48929a3: Add aggregate steps (Oleg Sivokon)
• cbd7e80: [fix] Pipleine tests due to changed interface (Oleg Sivokon)
• 192c060: Simplify aggregate functionality (Oleg Sivokon)
• 6c5d23b: change iwork init to include Aggregate (Candace Makeda Moore, MD)
• a43357b: add a group histo function (Candace Makeda Moore, MD)
• 5c8aaac: add proportion histo (Candace Makeda Moore, MD)
• aa25d04: lint and fix changes (Candace Makeda Moore, MD)
• b4dbd99: testing for histo aggregate funct (Candace Makeda Moore, MD)
• 802c9e5: try to fix test (Candace Makeda Moore, MD)
• be2278a: fixing test (Candace Makeda Moore, MD)
• 3252082: add test for additional histo (Candace Makeda Moore, MD)
• 4063975: fix show_images function by alt function (Candace Makeda Moore, MD)
• 428cb35: fix show my images in df function (Candace Makeda Moore, MD)
• 1359483: fix show_images_in_df function (Candace Makeda Moore, MD)
• 3ac7989: new function for segmentation (Candace Makeda Moore, MD)
• 27d659c: new function for segmentation,linted (Candace Makeda Moore, MD)
• f8cb2d0: new function for segmentation, relinted times 2 (Candace Makeda Moore, MD)
• c0e0cd5: new function for segmentation documentation (Candace Makeda Moore, MD)
• e8222b1: improve segment function and test (Candace Makeda Moore, MD)
• d5abef0: new function for segmentation remade, linting, testing (Candace Makeda Moore, MD)
• ecd24da: improve segment function tests (Candace Makeda Moore, MD)
• 0fb050f: fix paths in testing (Candace Makeda Moore, MD)
• 10234a0: Enable easier local testing and lintin (Candace Makeda Moore, MD)
• f21947e: last inside testing (Candace Makeda Moore, MD)
• a23314f: Add some documentation about local testing and building (Oleg Sivokon)
• 0e4e6dd: add binarize function and test (Candace Makeda Moore, MD)
• 0328a3a: make one otsu more efficient (Candace Makeda Moore, MD)
• d691db7: make otsu into stept (Candace Makeda Moore, MD)
• 68d2390: add otsu lines as a step (Candace Makeda Moore, MD)
• 3d3ba7b: add projection step (Candace Makeda Moore, MD)
• 014d250: must lint on branch, new function pil-library free for rotate (Candace Makeda Moore, MD)
• 4ad1b27: linted pill free rotation (Candace Makeda Moore, MD)
• 8f7318d: multi-rotate function without PIL (Candace Makeda Moore, MD)
• 7434b87: [fix] Let's see if fixing conda version helps with environment (Oleg Sivokon)
• 45f6b90: [fix] PEP8 (Oleg Sivokon)
• 0a0daca: [fix] Maybe we can prevent conda from updating this way (Oleg Sivokon)
• ce4cb61: Path Wheel and fix the version of CI conda-related s...

v0.1.13

[fix] anaconda command disappeared from CI images

v0.1.12

Commits

• a9bc057: fix readme (Candace Makeda Moore, MD)
• 3dbee6a: another cosmetic readme change (Candace Makeda Moore, MD)
• 787ca99: readme (Candace Makeda Moore, MD)
• 3b1a1a0: updating readme (Candace Makeda Moore, MD)
• be39c7f: readmefixes badges (Candace Makeda Moore, MD)
• f2cfbb5: binder changes (Candace Makeda Moore, MD)
• 51006ec: update binder notebook (Candace Makeda Moore, MD)
• d05dd6e: more binder updates (Candace Makeda Moore, MD)
• 9d39716: Add code and CI job to generate conda environment files (Oleg Sivokon)
• 4b70a9a: Reduce verbosity in conda installs (Oleg Sivokon)
• 0101040: [fix] Windows slashes in path (Oleg Sivokon)
• b9f3375: Add Developer's Guide (Oleg Sivokon)
• 9e29304: Add medical professional docs to the rest of the docs (Oleg Sivokon)

v0.1.11

Commits

• 3e2bebe: [fix] Added the fix for missing old Tesseract (Oleg Sivokon)
• 895493c: Renamed LICENSE_copy to LICENSE (Oleg Sivokon)
• abeda6e: [fix] subprocess throws different errors if it cannot find an executable (Oleg Sivokon)
• 83062bc: for improved workbook (Candace Makeda Moore, MD)
• 3554267: fix duplicates notebook (Candace Makeda Moore, MD)
• 3cf82a4: Split CLI code into submodules (Oleg Sivokon)
• 92d7381: Add rip_out_jpgs to DICOM readers (Oleg Sivokon)
• 2b3bfc5: Add test for image extraction, closes #40 (Oleg Sivokon)
• bc59336: [fix] PEP8 (Oleg Sivokon)
• 93cca3e: Update README to reflect the CLI changes (Oleg Sivokon)
• bcbd6cb: Split show_images_in_df into two functions (Oleg Sivokon)
• 04c938a: Add test for find_close_images (Oleg Sivokon)
• f6a28fd: [fix] Try to do shell expansion. May be helpful on Windows (Oleg Sivokon)
• 7143d8f: intermittant changes (Candace Makeda Moore, MD)
• d0180da: update notebooks1 (Candace Makeda Moore, MD)
• 88bd2d4: futher update notebooks (Candace Makeda Moore, MD)

v0.1.9

Commits

• 100c0b5: text formatting (Candace Makeda Moore, MD)
• a59ca86: workflow repair (Candace Makeda Moore, MD)
• c0eac3f: fix azure? (Candace Makeda Moore, MD)
• 80e05f1: more comments (Candace Makeda Moore, MD)
• 22278e1: Initial work on matrix builds (only for Linux so far) (Oleg Sivokon)
• bbc94f3: [fix] Specifying conda environment (Oleg Sivokon)
• 3833a05: linting (Candace Makeda Moore, MD)
• faf83b7: more documentation (Candace Makeda Moore, MD)
• 7bd071d: pull out #garbage (Candace Makeda Moore, MD)
• 3ebdabe: [fix] Linting and parents counting (Oleg Sivokon)
• a6f5c48: clean workflow folder (Candace Makeda Moore, MD)
• d604b52: Build conda packages on all supported systems (Oleg Sivokon) #20
• 6f14e87: Try another Windows shell syntax... (Oleg Sivokon) #20
• 58887ae: [fix] Prevent from installing new OpenCV, as it's broken on Macs (Oleg Sivokon) #20
• 9af076d: [fix] Seems like we didn't go back far enough (Oleg Sivokon) #20
• e99c449: [fix] Try to exclude Mac and Linux builds for Python 3.9 (Oleg Sivokon) #20
• f0449e2: Add some debugging info for conda forge (Oleg Sivokon) #20
• 536b688: [fix] conda list should be in the right environment (Oleg Sivokon) #20
• 375028c: Let's try w/o anaconda channel (Oleg Sivokon) #20
• d80726b: Try running releases in parallel collecting artifacts (Oleg Sivokon) #20
• 3ec7ec6: Run sanity with multiple extra dependencies (Oleg Sivokon) #22
• 1ab1d32: [fix] CLI tests should use sys.executable instead of python (Oleg Sivokon) #22
• 498daf6: [fix] PyPI version of pandas needs, but doesn't install pytz (Oleg Sivokon) #22
• c9c287c: [fix] Always upload artifacts (Oleg Sivokon) #22
• ef59e9d: [fix] Apparently, if you tell easy_install to install it will (Oleg Sivokon) #22
• 190ac41: Initial image processing pipeline code (Oleg Sivokon) #23
• 6d9de95: [fix] incorrect batching in pipeline (Oleg Sivokon) #23
• 1726df8: [fix] Apparently os.sched_getaffinity() is platform-dependent (Oleg Sivokon) #23
• 1806d67: [fix] Hopefully this will fix multiprocessing issues (Oleg Sivokon) #23
• 065c13e: rename,workflow,pipeline (Candace Makeda Moore, MD) #23
• d4e4f5b: clean testing (Candace Makeda Moore, MD) #23
• 73ff6fc: classy workflow (Candace Makeda Moore, MD) #23
• aafc132: fixed function and test (Candace Makeda Moore, MD) #23
• 3644d4a: fix minor lint (Candace Makeda Moore, MD) #23
• 21c2725: histogram normalize class (Candace Makeda Moore, MD)
• 136ecee: lint new class (Candace Makeda Moore, MD)
• 95caf1f: dataframes documentation (Candace Makeda Moore, MD)
• a0043d3: lint problem (Candace Makeda Moore, MD)
• 2a34c51: massive lint issue (Candace Makeda Moore, MD)
• 092b5b7: parenthesis lint (Candace Makeda Moore, MD)
• d1bd90d: Add documentation to pipeline classes (Oleg Sivokon)

v0.1.8

Commits

• 41d7d13: cleaning dicom dictionary (Candace Makeda Moore, MD)
• 3acb63e: update paper title (Candace Makeda Moore, MD)
• 41776cc: new names for pre-class (Candace Makeda Moore, MD)
• 5593742: [fix] The bdist_wheel build used to throw away the contents of the package (Oleg Sivokon)
• 8c5a030: [fix] lint (Candace Makeda Moore, MD)
• ac20785: lint again (Candace Makeda Moore, MD)
• 7a80f60: worflow update (Candace Makeda Moore, MD)
• 55d9553: classes for dataframes (Candace Makeda Moore, MD)
• f8833d0: linting new branch (Candace Makeda Moore, MD)
• 8a223d3: relinting new branch (Candace Makeda Moore, MD)
• 2e9a3f3: Sources for data import (Oleg Sivokon)
• 1884fb0: class to see data (Candace Makeda Moore, MD)
• 5beca66: [fix] PEP8 (Oleg Sivokon)
• 70f136e: more classes (Candace Makeda Moore, MD)
• 61bc323: adding classes (Candace Makeda Moore, MD)
• c7ce1cf: relinting again (Candace Makeda Moore, MD)
• 00a089a: double relint (Candace Makeda Moore, MD)
• c24d309: third lint (Candace Makeda Moore, MD)
• e2821ea: Example of generating report with output as Jupyter widget (Oleg Sivokon)
• dc3c791: classless workflow (Candace Makeda Moore, MD)
• 86e720e: start classy workflow demo (Candace Makeda Moore, MD)
• b461919: fix NAN counting (Candace Makeda Moore, MD)
• fe9a999: classes fix (Candace Makeda Moore, MD)
• 4a77c19: linting (Candace Makeda Moore, MD)
• 5b19f3c: relint (Candace Makeda Moore, MD)
• c72848f: add text output (Candace Makeda Moore, MD)
• 252c308: linting text function (Candace Makeda Moore, MD)
• 634df1b: workflow (Candace Makeda Moore, MD)
• 06b7d97: class workflow (Candace Makeda Moore, MD)
• b0e8a73: readme update (Candace Makeda Moore, MD)
• e985910: [wip] Command-line interface to cleanX (Oleg Sivokon) #18
• 3b86604: Added a simple test for CLI DICOM reader (Oleg Sivokon) #18
• e4a82f4: [fix] PEP8 (Oleg Sivokon) #18
• dce86de: [fix] Missing cli package from requirements (Oleg Sivokon) #18
• 1a039ae: Add optional dependencies in setup.py (Oleg Sivokon) #18
• 13ee89d: Added CLI for datasets processing (Oleg Sivokon) #18
• 9434dc3: Add a test for datasets CLI (Oleg Sivokon) #18

v0.1.7

Commits

• 9de4575: dicom explain link (Candace Makeda Moore, MD)
• 7805840: more readme (Candace Makeda Moore, MD)

v0.1.6

Commits

• 1b17492: Document PydicomDicomReader.read() (Oleg Sivokon)

v0.1.5

Commits

• 0ba7cb0: fds (Candace Makeda Moore, MD)
• dd69966: spell check readme (Candace Makeda Moore, MD)
• 52d7070: documentation updates (Candace Makeda Moore, MD)
• 5a45106: class documentation (Candace Makeda Moore, MD)
• b818d95: image_work documentation (Candace Makeda Moore, MD)
• 7041d28: [fix] Remove build artfiacts from CPython build (Oleg Sivokon)
• 7802f23: [fix] We don't really need the egg to generate conda manifest (Oleg Sivokon)
• f1c34ac: more documentation fixes (Candace Makeda Moore, MD)
• 9435401: [fix] Always force uploading the release (Oleg Sivokon)