Releases
v0.0.15
Commits
ab660b4 : final relint? (Candace Makeda Moore, MD)
80490c9 : relint again (Candace Makeda Moore, MD)
7a6fb58 : relint (Candace Makeda Moore, MD)
caab80d : [fix] infinite loop in image comparison test (Oleg Sivokon)
2dfad94 : Try rebuilding documentation specifying correct version (Oleg Sivokon)
fc57d08 : [fix] Wrong kind of checkout for documentation (Oleg Sivokon)
d0d3587 : temporary (Candace Makeda Moore, MD)
3e2c38a : Remove offending print (Oleg Sivokon)
678abcf : more fixing notebooks (Candace Makeda Moore, MD)
7a91266 : Prevent matplitlib interactive ui from appearing during test (Oleg Sivokon)
0e93db3 : Restore accidentally destroyed documentation (Oleg Sivokon)
1710916 : Remove inherited Exception members from documentation (Oleg Sivokon) #34
3a58149 : [fix] Minor fixes in documentation + adding IPython refs (Oleg Sivokon) #34
95e8105 : More documentation for DICOM adapters (Oleg Sivokon) #34
aa49d6b : minor changes to readme (Candace Makeda Moore, MD)
7afdc8d : special example race notebook (Candace Makeda Moore, MD)
b8b9dce : cosmetic notebook changes (Candace Makeda Moore, MD)
78ed914 : another notebook note (Candace Makeda Moore, MD)
d777064 : test new badges (Candace Makeda Moore, MD)
cf14697 : again (Candace Makeda Moore, MD)
e50a0a8 : take away anaconda version for now (Candace Makeda Moore, MD)
de96742 : change contact to discussions (Candace Makeda Moore, MD)
c97982d : [fix] Accidentally removed the code to upload packages to Anaconda (Oleg Sivokon)
05f5447 : [fix] Remove unnecessary documentation helpers, rename source dir (Oleg Sivokon)
9b7bbf8 : new release on badges (Candace Makeda Moore, MD)
be644e4 : [fix] Add setup.py command to upload to Anaconda and use it in CI (Oleg Sivokon)
4d94c47 : Move paper and related files into its own directory (Oleg Sivokon)
f88ae88 : Change links to badges in README (Oleg Sivokon)
e63efbf : Removed duplicate license (Oleg Sivokon)
e2d3bf2 : add lisence copy to paper folder (Candace Makeda Moore, MD)
d412635 : Add some tables to the README (Oleg Sivokon)
7780ec5 : [fix] Try different table formatting (Oleg Sivokon)
8acb554 : [wip] Paths in notebooks (Candace Makeda Moore, MD)
afce42c : change directory paths (Candace Makeda Moore, MD)
ed5b325 : Add some get started examples (Oleg Sivokon)
3e2bebe : [fix] Added the fix for missing old Tesseract (Oleg Sivokon)
895493c : Renamed LICENSE_copy to LICENSE (Oleg Sivokon)
abeda6e : [fix] subprocess throws different errors if it cannot find an executable (Oleg Sivokon)
83062bc : for improved workbook (Candace Makeda Moore, MD)
3554267 : fix duplicates notebook (Candace Makeda Moore, MD)
3cf82a4 : Split CLI code into submodules (Oleg Sivokon)
92d7381 : Add rip_out_jpgs to DICOM readers (Oleg Sivokon)
2b3bfc5 : Add test for image extraction, closes #40 (Oleg Sivokon)
bc59336 : [fix] PEP8 (Oleg Sivokon)
93cca3e : Update README to reflect the CLI changes (Oleg Sivokon)
bcbd6cb : Split show_images_in_df into two functions (Oleg Sivokon)
04c938a : Add test for find_close_images (Oleg Sivokon)
f6a28fd : [fix] Try to do shell expansion. May be helpful on Windows (Oleg Sivokon)
7143d8f : intermittant changes (Candace Makeda Moore, MD)
d0180da : update notebooks1 (Candace Makeda Moore, MD)
88bd2d4 : futher update notebooks (Candace Makeda Moore, MD)
a9bc057 : fix readme (Candace Makeda Moore, MD)
3dbee6a : another cosmetic readme change (Candace Makeda Moore, MD)
787ca99 : readme (Candace Makeda Moore, MD)
3b1a1a0 : updating readme (Candace Makeda Moore, MD)
be39c7f : readmefixes badges (Candace Makeda Moore, MD)
f2cfbb5 : binder changes (Candace Makeda Moore, MD)
51006ec : update binder notebook (Candace Makeda Moore, MD)
d05dd6e : more binder updates (Candace Makeda Moore, MD)
9d39716 : Add code and CI job to generate conda environment files (Oleg Sivokon)
4b70a9a : Reduce verbosity in conda installs (Oleg Sivokon)
0101040 : [fix] Windows slashes in path (Oleg Sivokon)
b9f3375 : Add Developer's Guide (Oleg Sivokon)
9e29304 : Add medical professional docs to the rest of the docs (Oleg Sivokon)
b390cc1 : Update minor version of setup-conda due to CVE (Oleg Sivokon)
187b33d : ignore DS_Store (Patrice Jada)
37bf117 : Move logo file to home dir (Patrice Jada)
8d26658 : Reorganize README.md landing page (Patrice Jada)
a0ec823 : Note about Python 3.10 not being tested yet. (Oleg Sivokon)
b494c4d : [fix] Documentation about Anaconda development workflow (Oleg Sivokon)
5b462c6 : [fix] Prevent conda from randomly updating Python version (Oleg Sivokon)
9bb14bb : new image quality functions (Candace Makeda Moore, MD)
aed6ddc : Added back changes from .gitignore (Candace Makeda Moore, MD)
4824fb7 : fixtest code and linting (Candace Makeda Moore, MD)
e02429d : relint (Candace Makeda Moore, MD)
6a6215b : image_functions fix histofunct (Candace Makeda Moore, MD)
b718c4f : update init .py with new functions (Candace Makeda Moore, MD)
3786364 : update init .py with new functions (Candace Makeda Moore, MD)
11e93a1 : fix testing output (Candace Makeda Moore, MD)
f4d7516 : update __fix testing again (Candace Makeda Moore, MD)
0685649 : fix testing output, by temporarily not testing image_to_hist (Candace Makeda Moore, MD)
d479c5f : Restore the header from README (Oleg Sivokon)
2979ce9 : hjfk unscrewing up readme (Candace Makeda Moore, MD)
cac13f8 : still fixing readme mess (Candace Makeda Moore, MD)
fb13ac0 : still fixing readme mess (Candace Makeda Moore, MD)
b90b6de : still fixing readme mess (Candace Makeda Moore, MD)
c535ba5 : still fixing readme mess (Candace Makeda Moore, MD)
5915776 : still fixing readme (Candace Makeda Moore, MD)
aefe5f9 : again (Candace Makeda Moore, MD)
db2ed8b : fixes readme (Candace Makeda Moore, MD)
9ecd91e : more readme fixes (Candace Makeda Moore, MD)
58e2072 : more readme fixes (Candace Makeda Moore, MD)
a022b7b : more readme fixes (Candace Makeda Moore, MD)
396df1b : more readme fixes, again (Candace Makeda Moore, MD)
581157a : more readme fixes (Candace Makeda Moore, MD)
3f3d82d : more readme fixes, again (Candace Makeda Moore, MD)
de360c7 : more readme fixes, again2 (Candace Makeda Moore, MD)
74bc63f : more readme fixes, again3 (Candace Makeda Moore, MD)
777b3f0 : badges fix (Candace Makeda Moore, MD)
8f8e6ad : add salting step (Candace Makeda Moore, MD)
86bd39d : lint salting step (Candace Makeda Moore, MD)
51bb5e8 : fix salt with returning 2 values (Candace Makeda Moore, MD)
b26c536 : more image augmenting steps for pipeline (Candace Makeda Moore, MD)
569a0a2 : linting new steps for pipeline (Candace Makeda Moore, MD)
4c207cf : add testing on new steps (Candace Makeda Moore, MD)
090285d : lint add testing on new steps (Candace Makeda Moore, MD)
ae69ef0 : add testing on new steps,linted and init fixed (Candace Makeda Moore, MD)
965e8c1 : remove salt function (Candace Makeda Moore, MD)
27e365b : [fix] New steps missing pickle helpers (Oleg Sivokon)
6853e2a : lint oleg's pickle fixes (Candace Makeda Moore, MD)
6905b61 : fix oleg's pickle and tests (Candace Makeda Moore, MD)
4d03864 : lint oleg's pickle fixes again (Candace Makeda Moore, MD)
978e391 : fix oleg's pickle and tests, refix (Candace Makeda Moore, MD)
48929a3 : Add aggregate steps (Oleg Sivokon)
cbd7e80 : [fix] Pipleine tests due to changed interface (Oleg Sivokon)
192c060 : Simplify aggregate functionality (Oleg Sivokon)
6c5d23b : change iwork init to include Aggregate (Candace Makeda Moore, MD)
a43357b : add a group histo function (Candace Makeda Moore, MD)
5c8aaac : add proportion histo (Candace Makeda Moore, MD)
aa25d04 : lint and fix changes (Candace Makeda Moore, MD)
b4dbd99 : testing for histo aggregate funct (Candace Makeda Moore, MD)
802c9e5 : try to fix test (Candace Makeda Moore, MD)
be2278a : fixing test (Candace Makeda Moore, MD)
3252082 : add test for additional histo (Candace Makeda Moore, MD)
4063975 : fix show_images function by alt function (Candace Makeda Moore, MD)
428cb35 : fix show my images in df function (Candace Makeda Moore, MD)
1359483 : fix show_images_in_df function (Candace Makeda Moore, MD)
3ac7989 : new function for segmentation (Candace Makeda Moore, MD)
27d659c : new function for segmentation,linted (Candace Makeda Moore, MD)
f8cb2d0 : new function for segmentation, relinted times 2 (Candace Makeda Moore, MD)
c0e0cd5 : new function for segmentation documentation (Candace Makeda Moore, MD)
e8222b1 : improve segment function and test (Candace Makeda Moore, MD)
d5abef0 : new function for segmentation remade, linting, testing (Candace Makeda Moore, MD)
ecd24da : improve segment function tests (Candace Makeda Moore, MD)
0fb050f : fix paths in testing (Candace Makeda Moore, MD)
10234a0 : Enable easier local testing and lintin (Candace Makeda Moore, MD)
f21947e : last inside testing (Candace Makeda Moore, MD)
a23314f : Add some documentation about local testing and building (Oleg Sivokon)
0e4e6dd : add binarize function and test (Candace Makeda Moore, MD)
0328a3a : make one otsu more efficient (Candace Makeda Moore, MD)
d691db7 : make otsu into stept (Candace Makeda Moore, MD)
68d2390 : add otsu lines as a step (Candace Makeda Moore, MD)
3d3ba7b : add projection step (Candace Makeda Moore, MD)
014d250 : must lint on branch, new function pil-library free for rotate (Candace Makeda Moore, MD)
4ad1b27 : linted pill free rotation (Candace Makeda Moore, MD)
8f7318d : multi-rotate function without PIL (Candace Makeda Moore, MD)
7434b87 : [fix] Let's see if fixing conda version helps with environment (Oleg Sivokon)
45f6b90 : [fix] PEP8 (Oleg Sivokon)
0a0daca : [fix] Maybe we can prevent conda from updating this way (Oleg Sivokon)
ce4cb61 : Path Wheel and fix the version of CI conda-related stuff (Oleg Sivokon)
e6cd2cd : Add note about installing tesseract libraries (Oleg Sivokon)
9f3f108 : go PIL free (Candace Makeda Moore, MD)
ec84690 : update readme to leave off PIL + linting (Candace Makeda Moore, MD)
0008e33 : [fix] Don't escape glob expression (Oleg Sivokon)
5d822ab : new function for total pixel (Candace Makeda Moore, MD)
7e7b8fc : addd group pixelsum histos (Candace Makeda Moore, MD)
596b73c : Let's see if explicitly requesting python in our environment helps (Oleg Sivokon)
fd3ac02 : Let's see if anything done by metadata conversion is actually necessary (Oleg Sivokon)
842c6d6 : add a function to pull white frames (Candace Makeda Moore, MD)
0643a87 : better overall crop, update affil on paper (Candace Makeda Moore, MD)
7b1b95d : fixing paper again? (Candace Makeda Moore, MD)
736a546 : minor documentation fix (Candace Makeda Moore, MD)
0da37e7 : image quality function and test (Candace Makeda Moore, MD)
8a95692 : update function (Candace Makeda Moore, MD)
17de4f3 : additional parameters to image quality matrix (Candace Makeda Moore, MD)
2ed313b : further update quality function (Candace Makeda Moore, MD)
60aebcb : fix failing test on image quality function (Candace Makeda Moore, MD)
ed098f5 : test restored pipeline, and addition to quality matrix (Candace Makeda Moore, MD)
8764e19 : quality function demo explanation (Candace Makeda Moore, MD)
8b0faa8 : delete extra checkpoint file plus minor changes to docu (Candace Makeda Moore, MD)
6bc95f2 : fourier funct and testing updates (Candace Makeda Moore, MD)
126f287 : fourier step and test (Candace Makeda Moore, MD)
c80e1b6 : projection step and test (Candace Makeda Moore, MD)
d087d64 : contourimage step added (Candace Makeda Moore, MD)
74eac50 : cut and pad functions and testing for them (Candace Makeda Moore, MD)
2bbfaab : add crop_or_cut function and testing (Candace Makeda Moore, MD)
3e059f1 : better rotate function and test (Candace Makeda Moore, MD)
36e4fd3 : cleancrop step and test (Candace Makeda Moore, MD)
f33a2a3 : [fix] serialization in CleanRotate (Oleg Sivokon)
11e5b01 : image noise matrix function (Candace Makeda Moore, MD)
aebaf5f : additional noise function, delete mistake placed file (Candace Makeda Moore, MD)
1fd0606 : update image quality notebook with noise matrix mention (Candace Makeda Moore, MD)
072ebb3 : noise in segmented function and test (Candace Makeda Moore, MD)
6385fd0 : improve segmented noise (Candace Makeda Moore, MD)
6ec9fd6 : segmented function correction (Candace Makeda Moore, MD)
6515abe : segmented function correction (Candace Makeda Moore, MD)
ace1866 : finished image quality notebook (Candace Makeda Moore, MD)
4679132 : more in image quality notebook (Candace Makeda Moore, MD)
1234b8b : minor function to pick up inverts and test (Candace Makeda Moore, MD)
11bf987 : fix typos in additional_demos and CLI/dicom.py (Candace Makeda Moore, MD)
89ca280 : typo fixes in dataset_processing and pydicom_adapter (Candace Makeda Moore, MD)
e1ed61b : fix typos in dicom processing (Candace Makeda Moore, MD)
722269a : fix image_work init and image_functions to line 600 typos (Candace Makeda Moore, MD)
5b610e9 : remove word idiots (Candace Makeda Moore, MD)
f374b80 : fix typos and reword some docu for image_functions (Candace Makeda Moore, MD)
5d74d15 : finish fixing typos in image_work (Candace Makeda Moore, MD)
e26fab1 : finish fixing typos in image_work (Candace Makeda Moore, MD)
a723718 : documentation changes in Steps (Candace Makeda Moore, MD)
9669d12 : comment out test install trick (Candace Makeda Moore, MD)
e622529 : update workflow for medical people (Candace Makeda Moore, MD)
72c5665 : [fix] Account for incomplete table in show_images_in_df (Oleg Sivokon)
474d599 : [fix] Add a cv2.imread wrapper that raises error when it returns None (Oleg Sivokon)
1ec59b5 : update example csv (Candace Makeda Moore, MD)
aa3e888 : updates not to be pushed until latere (Candace Makeda Moore, MD)
8e5b561 : dfhjkdshfk unstash commit (Candace Makeda Moore, MD)
0dc3552 : updated no_classes_workflow_example.ipynb (Candace Makeda Moore, MD)
3d95a41 : cleaner looking notebook (Candace Makeda Moore, MD)
226cd99 : update affiliations paper (Candace Makeda Moore, MD)
4a83815 : [fix] image and delete bindier directory (Oleg Sivokon)
5fe76ac : replace lost logo (Candace Makeda Moore, MD)
4016400 : Updating apt package information to generate documentation (Oleg Sivokon)
9511c2f : [fix] genconda command changed (Oleg Sivokon)
c4fa374 : [fix] anaconda command disappeared from CI images (Oleg Sivokon)
6f725e9 : Add more installation instructions to the readme (Oleg Sivokon)
bb18b45 : update workflow and dataframes.py (Candace Makeda Moore, MD)
9152a5c : Use global values (PatriceJada)
349b983 : Move common values to the top (PatriceJada)
f1b5428 : Update test_cleanx.py (PatriceJada)
e9bc5bc : Update medical-professionals.rst (andrew-f-murphy)
0fa95b9 : Update README.md (andrew-f-murphy)
2ae2c1a : Update README.md (andrew-f-murphy)
37269a2 : fix zero_to_twofivefive_simplest_norming function (Candace Makeda Moore, MD)
c41e509 : fix steps normalization bug (Candace Makeda Moore, MD)
82f3b72 : [fix] rescale_range_from_histogram_low_end (Oleg Sivokon)
32c73af : add explanation on fixed normalize function (Candace Makeda Moore, MD)
15e5f41 : Port changes from image_functions to steps, fix failing test (Oleg Sivokon)
8c3edbe : add explanation on fixed normalize function (Candace Makeda Moore, MD)
db06148 : Try to make builds faster (Oleg Sivokon)
43abb49 : Try different solver (Oleg Sivokon)
779aef0 : Some info for bug report (Oleg Sivokon)
a3f65ca : Remove the alternative solver (doesn't work anyways) (Oleg Sivokon)
789eb8d : Let's see if we can get rid of the defaults channel (Oleg Sivokon)
1f45dc8 : add patrice as author (Candace Makeda Moore, MD)
b4d07a3 : misplaced file in bias_not (Candace Makeda Moore, MD)
cf07e29 : Replace PNG logo with SVG one (Oleg Sivokon)
4671688 : Try changing text color based on color scheme (Oleg Sivokon)
197740e : linted new helper function for inverting (Candace Makeda Moore, MD)
dcb3e82 : step for inverting all images (Candace Makeda Moore, MD)
03685bd : add documentation for make_inverted (Candace Makeda Moore, MD)
b6c7233 : Set strict version requirements for dependencies in Lunux Py3.8 (wvxvw)
61e7d94 : new compare function with hash (Candace Makeda Moore, MD)
8f0ad27 : updated for_medical_people notebook (Candace Makeda Moore, MD)
d2f5773 : update biass_not throw duplicates_note out (Candace Makeda Moore, MD)
c3e41e6 : update duplicates-function in no_classes_workflow_example (Candace Makeda Moore, MD)
66921ea : add auto dataset download (Candace Makeda Moore, MD)
2edeeb3 : add no_classes_workflow update male folder explanation (Candace Makeda Moore, MD)
5b1dd78 : Add files via upload (andrew-f-murphy)
943817e : rename Andrew version (Candace Makeda Moore, MD)
a686c8d : Prepare to publish new version (wvxvw)
c9bc95c : [fix] Let's see if we can publish w/o anaconda package (wvxvw)
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