adjust tests for FRASER2

gagneurlab · Oct 7, 2024 · d060955 · d060955
1 parent 09d62fe
commit d060955
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Showing 2 changed files with 6 additions and 3 deletions.
diff --git a/tests/config/test_AS.py b/tests/config/test_AS.py
@@ -18,7 +18,7 @@ def test_config(self, dropConfig,demo_dir):
             'deltaPsiCutoff': 0.05,
             'maxTestedDimensionProportion': 6,
             'genesToTest': 'Data/genes_to_test.yaml',
-            'FRASER_version': 'FRASER'
+            'FRASER_version': 'FRASER2',
         }
         assert dict_.items() <= dropConfig.AS.dict_.items()
 

diff --git a/tests/pipeline/test_AS.py b/tests/pipeline/test_AS.py
@@ -56,6 +56,9 @@ def test_results(self, demo_dir):
         annotation = "v29"
         dataset = "fraser"
         r = run(f"wc -l {results_dir}/{annotation}/fraser/{dataset}/results_per_junction.tsv", demo_dir)
-        assert "4137" == r.stdout.split()[0] 
+        assert "980" == r.stdout.split()[0] 
         r = run(f"wc -l {results_dir}/{annotation}/fraser/{dataset}/results.tsv", demo_dir)
-        assert "310" == r.stdout.split()[0] 
+        assert "194" == r.stdout.split()[0] 
+        r = run(f"wc -l {results_dir}/{annotation}/fraser/{dataset}/results_gene_all.tsv", demo_dir)
+        assert "391" == r.stdout.split()[0]
+