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Ensure correct output formats of seqtk_seq and seqtk_mergefa in all cases #6393

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merged 16 commits into from
Oct 16, 2024

Commits on Sep 24, 2024

  1. Update seqtk_mergefa.xml

    - Restricted input formats to only FASTA and compressed FASTA files (.fasta, .fasta.gz). Removed support for FASTQ files.
    - Updated the tool description and help section to accurately reflect that the tool only merges FASTA files.
    - Improved the tool's clarity by ensuring it is used for its intended purpose: merging FASTA files only.
    dianichj authored Sep 24, 2024
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  2. Merge pull request #1 from dianichj/dianichj-patch-1

    Update seqtk_mergefa.xml
    dianichj authored Sep 24, 2024
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Commits on Sep 25, 2024

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Commits on Sep 26, 2024

  1. Update seqtk_mergefa.xml

    "Tool merges FASTA/Q files into a FASTA output and considers the quality threshold for FASTQ files when merging."
    
    1. Clarified the -m option to handle ambiguous bases and conflicts (e.g., N and other IUPAC codes).
    2. Improved help documentation with clearer examples and explanations.
    3. Refined input parameter labels for better clarity and consistency.
    dianichj authored Sep 26, 2024
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  2. Update seqtk_mergefa.xml

    edited echo command line back to #echo
    dianichj authored Sep 26, 2024
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Commits on Oct 1, 2024

  1. adjust output format for -A

    RZ9082 committed Oct 1, 2024
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  2. add test

    RZ9082 committed Oct 1, 2024
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Commits on Oct 2, 2024

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Commits on Oct 5, 2024

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  2. fix lint warnings

    RZ9082 committed Oct 5, 2024
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Commits on Oct 8, 2024

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Commits on Oct 9, 2024

  1. galaxy.json configfile

    RZ9082 committed Oct 9, 2024
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Commits on Oct 15, 2024

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Commits on Oct 16, 2024

  1. Merge pull request #1 from wm75/suggestions-from-review

    Suggestions from review
    RZ9082 authored Oct 16, 2024
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