Add new training for scATAC-seq batch correction using SnapATAC2

topics/single-cell/tutorials/scatac-batch-correction-snapatac2/data-library.yaml

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+---
+destination:
+  type: library
+  name: GTN - Material
+  description: Galaxy Training Network Material
+  synopsis: Galaxy Training Network Material. See https://training.galaxyproject.org
+items:
+- name: The new topic
+  description: Summary
+  items:
+  - name: scATAC-seq standard processing with SnapATAC2
+    items:
+    - name: 'DOI: 10.5281/zenodo.12683310' 
+      description: latest
+      items:
+      - url: https://zenodo.org/api/records/12683310/files/colon_multisample_01.gz
+        src: url
+        ext: auto
+        info: https://zenodo.org/records/12683310
+      - url: https://zenodo.org/api/records/12683310/files/colon_multisample_02.gz
+        src: url
+        ext: auto
+        info: https://zenodo.org/records/12683310
+      - url: https://zenodo.org/api/records/12683310/files/colon_multisample_03.gz
+        src: url
+        ext: auto
+        info: https://zenodo.org/records/12683310
+      - url: https://zenodo.org/api/records/12683310/files/colon_multisample_04.gz
+        src: url
+        ext: auto
+        info: https://zenodo.org/records/12683310
+      - url: https://zenodo.org/api/records/12683310/files/colon_multisample_05.gz
+        src: url
+        ext: auto
+        info: https://zenodo.org/records/12683310
+      - url: https://zenodo.org/api/records/12683310/files/gencode.v46.annotation.gtf.gz/
+        src: url
+        ext: auto
+        info: https://zenodo.org/records/12683310
+      - url: https://zenodo.org/api/records/12683310/files/chrom_sizes.txt/
+        src: url
+        ext: auto
+        info: https://zenodo.org/records/12683310

topics/single-cell/tutorials/scatac-batch-correction-snapatac2/faqs/index.md

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+---
+layout: faq-page
+---

topics/single-cell/tutorials/scatac-batch-correction-snapatac2/tutorial.bib

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+
+# This is the bibliography file for your tutorial.
+#
+# To add bibliography (bibtex) entries here, follow these steps:
+#  1) Find the DOI for the article you want to cite
+#  2) Go to https://doi2bib.org and fill in the DOI
+#  3) Copy the resulting bibtex entry into this file
+#
+# To cite the example below, in your tutorial.md file
+# use {% cite Batut2018 %}
+#
+# If you want to cite an online resourse (website etc)
+# you can use the 'online' format (see below)
+#
+# You can remove the examples below
+
+@article{Batut2018,
+  doi = {10.1016/j.cels.2018.05.012},
+  url = {https://doi.org/10.1016/j.cels.2018.05.012},
+  year = {2018},
+  month = jun,
+  publisher = {Elsevier {BV}},
+  volume = {6},
+  number = {6},
+  pages = {752--758.e1},
+  author = {B{\'{e}}r{\'{e}}nice Batut and Saskia Hiltemann and Andrea Bagnacani and Dannon Baker and Vivek Bhardwaj and
+           Clemens Blank and Anthony Bretaudeau and Loraine Brillet-Gu{\'{e}}guen and Martin {\v{C}}ech and John Chilton
+           and Dave Clements and Olivia Doppelt-Azeroual and Anika Erxleben and Mallory Ann Freeberg and Simon Gladman and
+           Youri Hoogstrate and Hans-Rudolf Hotz and Torsten Houwaart and Pratik Jagtap and Delphine Larivi{\`{e}}re and
+           Gildas Le Corguill{\'{e}} and Thomas Manke and Fabien Mareuil and Fidel Ram{\'{i}}rez and Devon Ryan and
+           Florian Christoph Sigloch and Nicola Soranzo and Joachim Wolff and Pavankumar Videm and Markus Wolfien and
+           Aisanjiang Wubuli and Dilmurat Yusuf and James Taylor and Rolf Backofen and Anton Nekrutenko and Bj\"{o}rn Gr\"{u}ning},
+  title = {Community-Driven Data Analysis Training for Biology},
+  journal = {Cell Systems}
+}
+@article{Korsunsky2019,
+  title = {Fast,  sensitive and accurate integration of single-cell data with Harmony},
+  volume = {16},
+  ISSN = {1548-7105},
+  url = {http://dx.doi.org/10.1038/s41592-019-0619-0},
+  DOI = {10.1038/s41592-019-0619-0},
+  number = {12},
+  journal = {Nature Methods},
+  publisher = {Springer Science and Business Media LLC},
+  author = {Korsunsky,  Ilya and Millard,  Nghia and Fan,  Jean and Slowikowski,  Kamil and Zhang,  Fan and Wei,  Kevin and Baglaenko,  Yuriy and Brenner,  Michael and Loh,  Po-ru and Raychaudhuri,  Soumya},
+  year = {2019},
+  month = nov,
+  pages = {1289–1296}
+}
+@article{Zhang2024,
+  title = {A fast,  scalable and versatile tool for analysis of single-cell omics data},
+  volume = {21},
+  ISSN = {1548-7105},
+  url = {http://dx.doi.org/10.1038/s41592-023-02139-9},
+  DOI = {10.1038/s41592-023-02139-9},
+  number = {2},
+  journal = {Nature Methods},
+  publisher = {Springer Science and Business Media LLC},
+  author = {Zhang,  Kai and Zemke,  Nathan R. and Armand,  Ethan J. and Ren,  Bing},
+  year = {2024},
+  month = jan,
+  pages = {217–227}
+}
+@online{gtn-website,
+  author = {GTN community},
+  title = {GTN Training Materials: Collection of tutorials developed and maintained by the worldwide Galaxy community},
+  url = {https://training.galaxyproject.org},
+  urldate = {2021-03-24}
+}