Update cellranger_multi.py

mskcc · May 20, 2024 · 2a39044 · 2a39044
1 parent e9bb520
commit 2a39044
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scripts/cellranger_multi.py b/scripts/cellranger_multi.py
@@ -418,12 +418,12 @@ def gather_sample_set_info(sample_name):
         for key, value in sample.items():
             if value[0].startswith(ilab_request) and key.endswith(sample_number):
                 value[2] = value[2].split(",")
-                if "10X_Genomics_FeatureBarcoding" in value[2][0]:
+                if "SC_Chromium-FB-5" in value[2][0]:
                     if "Feature Barcoding" in fb_type:
                         sample_set["fb"] = "_IGO_".join([value[1], key])
                     if "Cell Hashing" in fb_type:
                         sample_set["ch"] = "_IGO_".join([value[1], key])
-                if "10X_Genomics_VDJ" in value[2][0]:
+                if "SC_Chromium-BCR" in value[2][0] or "SC_Chromium-TCR" in value[2][0]:
                     sample_set["vdj"] = "_IGO_".join([value[1], key])
     # TODO add vdj type to the whole pipeline
     return sample_set