POC of new meta.yml structure and ontologies #11972
mirpedroltest.yml
on: pull_request
Matrix: nf-test
Waiting for pending jobs
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
2s
Annotations
11 errors and 3 warnings
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nf-core-lint-modules (cat/cat)
Process completed with exit code 1.
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nf-core-lint-modules (concoct/extractfastabins)
ambiguous argument 'HEAD': unknown revision or path not in the working tree.
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nf-core-lint-modules (plink/ld)
Process completed with exit code 1.
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nf-core-lint-modules (fastp)
Process completed with exit code 1.
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nf-core-lint-modules (pear)
Process completed with exit code 1.
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nf-core-lint-modules (multiqc)
Process completed with exit code 1.
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nf-core-lint-modules (samtools/index)
Process completed with exit code 1.
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nf-core-lint-modules (bwa/mem)
Process completed with exit code 1.
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nf-core-lint-modules (samtools/sort)
Process completed with exit code 1.
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confirm-pass
Process completed with exit code 1.
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Run tests
Strategy expansion exceeded 256 results for job 'nf-test'
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pytest-changes
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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nf-core-lint-modules (concoct/extractfastabins)
Unable to clean or reset the repository. The repository will be recreated instead.
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