POC of new meta.yml structure and ontologies #11972

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Job	Run time
editorconfig	13s
prettier	1m 10s
nf-test-changes	5m 38s
pre-commit	29s
pytest-changes	8s
pytest (atlas/splitmerge, conda)	3m 3s
pytest (atlas/splitmerge, docker)	3m 21s
pytest (atlas/splitmerge, singularity)	3m 7s
pytest (spring/decompress, conda)	5m 10s
pytest (spring/decompress, docker)	3m 1s
pytest (spring/decompress, singularity)	2m 59s
nf-core-lint-modules (bam_dedup_stats_samtools_umicollapse)	1m 32s
nf-core-lint-modules (bam_rseqc)	47s
nf-core-lint-modules (bam_dedup_stats_samtools_umitools)	1m 5s
nf-core-lint-modules (fastq_extract_kraken_krakentools)	47s
nf-core-lint-modules (fastq_taxonomic_profile_metaphlan)	1m 20s
nf-core-lint-modules (fastq_align_hisat2)	49s
nf-core-lint-modules (fastq_align_mapad)	1m 37s
nf-core-lint-modules (bam_sort_stats_samtools)	1m 20s
nf-core-lint-modules (fastq_fastqc_umitools_fastp)	57s
nf-core-lint-modules (fastq_align_bowtie2)	54s
nf-core-lint-modules (fastq_subsample_fq_salmon)	49s
nf-core-lint-modules (fastq_align_dna)	1m 3s
nf-core-lint-modules (bedgraph_bedclip_bedgraphtobigwig)	1m 26s
nf-core-lint-modules (fasta_build_add_kraken2_bracken)	1m 11s
nf-core-lint-modules (preprocess_rnaseq)	1m 9s
nf-core-lint-modules (fastq_align_star)	1m 21s
nf-core-lint-modules (fasta_binning_concoct)	1m 23s
nf-core-lint-modules (bam_variant_demix_boot_freyja)	59s
nf-core-lint-modules (fastq_align_bwa)	53s
nf-core-lint-modules (fastq_fastqc_umitools_trimgalore)	1m 27s
nf-core-lint-modules (bam_markduplicates_picard)	1m 11s
nf-core-lint-modules (fasta_build_add_kraken2)	1m 21s
nf-core-lint-modules (quantify_pseudo_alignment)	1m 27s
nf-core-lint-modules (mmseqs_contig_taxonomy)	1m 11s
nf-core-lint-modules (fastq_align_bamcmp_bwa)	1m 1s
nf-core-lint-modules (bam_stats_samtools)	1m 6s
nf-core-lint-modules (fgbio/groupreadsbyumi)	1m 39s
nf-core-lint-modules (president)	1m 58s
nf-core-lint-modules (rseqc/junctionsaturation)	1m 17s
nf-core-lint-modules (amplify/predict)	1m 41s
nf-core-lint-modules (concoct/extractfastabins)	2m 3s
nf-core-lint-modules (ngscheckmate/patterngenerator)	2m 3s
nf-core-lint-modules (fgbio/fastqtobam)	2m 8s
nf-core-lint-modules (rseqc/readduplication)	1m 20s
nf-core-lint-modules (cat/cat)	1m 27s
nf-core-lint-modules (cobrameta)	2m 26s
nf-core-lint-modules (ensemblvep/vep)	1m 31s
nf-core-lint-modules (hamronization/fargene)	1m 24s
nf-core-lint-modules (liftoff)	2m 7s
nf-core-lint-modules (interproscan)	2m 1s
nf-core-lint-modules (famsa/guidetree)	2m 11s
nf-core-lint-modules (multiqc)	2m 30s
nf-core-lint-modules (somalier/extract)	1m 22s
nf-core-lint-modules (umitools/dedup)	1m 14s
nf-core-lint-modules (bcftools/isec)	1m 55s
nf-core-lint-modules (shinyngs/app)	1m 20s
nf-core-lint-modules (nonpareil/nonpareil)	1m 43s
nf-core-lint-modules (vireo)	1m 21s
nf-core-lint-modules (kallisto/index)	1m 55s
nf-core-lint-modules (rseqc/inferexperiment)	1m 44s
nf-core-lint-modules (trimmomatic)	1m 23s
nf-core-lint-modules (concoct/mergecutupclustering)	1m 19s
nf-core-lint-modules (pear)	2m 17s
nf-core-lint-modules (rseqc/innerdistance)	2m 5s
nf-core-lint-modules (fgbio/sortbam)	1m 34s
nf-core-lint-modules (kraken2/add)	1m 26s
nf-core-lint-modules (leviosam2/lift)	1m 35s
nf-core-lint-modules (deepvariant)	2m 40s
nf-core-lint-modules (md5sum)	1m 17s
nf-core-lint-modules (agat/spfilterfeaturefromkilllist)	1m 33s
nf-core-lint-modules (famsa/align)	1m 20s
nf-core-lint-modules (rseqc/bamstat)	1m 19s
nf-core-lint-modules (kallisto/quant)	1m 58s
nf-core-lint-modules (foldseek/easysearch)	1m 17s
nf-core-lint-modules (cellsnp/modea)	1m 33s
nf-core-lint-modules (ngscheckmate/fastq)	1m 53s
nf-core-lint-modules (ariba/run)	1m 20s
nf-core-lint-modules (last/dotplot)	1m 29s
nf-core-lint-modules (islandpath)	1m 53s
nf-core-lint-modules (plink/ld)	2m 4s
nf-core-lint-modules (ribotricer/prepareorfs)	1m 24s
nf-core-lint-modules (foldseek/createdb)	1m 17s
nf-core-lint-modules (chewbbaca/createschema)	1m 28s
nf-core-lint-modules (ribotricer/detectorfs)	1m 32s
nf-core-lint-modules (ngscheckmate/vafncm)	1m 19s
nf-core-lint-modules (presto/filterseq)	1m 24s
nf-core-lint-modules (gunzip)	2m 21s
nf-core-lint-modules (bowtie/align)	1m 22s
nf-core-lint-modules (checkv/endtoend)	1m 26s
nf-core-lint-modules (fgbio/filterconsensusreads)	2m 8s
nf-core-lint-modules (datavzrd)	1m 15s
nf-core-lint-modules (ltrretriever/ltrretriever)	1m 23s
nf-core-lint-modules (faqcs)	1m 35s
nf-core-lint-modules (kraken2/build)	1m 28s
nf-core-lint-modules (affy/justrma)	1m 40s
nf-core-lint-modules (subread/featurecounts)	1m 18s
nf-core-lint-modules (bwa/mem)	2m 39s
nf-core-lint-modules (bamstats/generalstats)	1m 17s
nf-core-lint-modules (multivcfanalyzer)	1m 41s
nf-core-lint-modules (deepbgc/pipeline)	1m 20s
nf-core-lint-modules (concoct/concoctcoveragetable)	1m 47s
nf-core-lint-modules (pilon)	1m 24s
nf-core-lint-modules (evigene/tr2aacds)	2m 39s
nf-core-lint-modules (nanoq)	2m 8s
nf-core-lint-modules (fargene)	2m 4s
nf-core-lint-modules (ribotish/predict)	1m 25s
nf-core-lint-modules (shinyngs/staticexploratory)	1m 20s
nf-core-lint-modules (fgbio/callmolecularconsensusreads)	1m 37s
nf-core-lint-modules (fgbio/zipperbams)	1m 36s
nf-core-lint-modules (kaiju/kaiju2krona)	1m 30s
nf-core-lint-modules (ucsc/bedclip)	1m 22s
nf-core-lint-modules (velocyto)	1m 24s
nf-core-lint-modules (samtools/sort)	1m 17s
nf-core-lint-modules (rseqc/readdistribution)	1m 15s
nf-core-lint-modules (rsem/calculateexpression)	1m 26s
nf-core-lint-modules (tcoffee/seqreformat)	1m 20s
nf-core-lint-modules (leviosam2/index)	1m 31s
nf-core-lint-modules (humid)	1m 22s
nf-core-lint-modules (clame)	1m 15s
nf-core-lint-modules (fastme)	2m 32s
nf-core-lint-modules (rseqc/junctionannotation)	1m 24s
nf-core-lint-modules (phantompeakqualtools)	2m 0s
nf-core-lint-modules (ltrretriever/lai)	1m 20s
nf-core-lint-modules (antismash/antismashlite)	1m 37s
nf-core-lint-modules (pbtk/pbindex)	1m 47s
nf-core-lint-modules (umitools/extract)	1m 16s
nf-core-lint-modules (trimgalore)	1m 20s
nf-core-lint-modules (concoct/concoct)	2m 7s
nf-core-lint-modules (ariba/getref)	1m 21s
nf-core-lint-modules (fgbio/callduplexconsensusreads)	2m 6s
nf-core-lint-modules (rseqc/tin)	1m 20s
nf-core-lint-modules (ltrfinder)	1m 51s
nf-core-lint-modules (somalier/relate)	1m 15s
nf-core-lint-modules (rsem/preparereference)	2m 3s
nf-core-lint-modules (tcoffee/align)	1m 19s
nf-core-lint-modules (samtools/index)	1m 16s
nf-core-lint-modules (stranger)	1m 20s
nf-core-lint-modules (sourmash/compare)	1m 15s
nf-core-lint-modules (bowtie/build)	2m 2s
nf-core-lint-modules (snpsites)	1m 16s
nf-core-lint-modules (fastp)	2m 10s
confirm-pass	2s
	3h 50m 58s

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POC of new meta.yml structure and ontologies #11972

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POC of new meta.yml structure and ontologies #11972

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