Update modules/nf-core/pbsv/call/main.nf

Co-authored-by: Felix Lenner <52530259+fellen31@users.noreply.github.com>
nf-core · Oct 31, 2024 · 9d49f85 · 9d49f85
1 parent 79179ea
commit 9d49f85
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/modules/nf-core/pbsv/call/main.nf b/modules/nf-core/pbsv/call/main.nf
@@ -22,7 +22,13 @@ process PBSV_CALL {
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
     """
-    pbsv call -j ${task.cpus} ${fasta} ${svsig} ${prefix}.vcf $args
+    pbsv \\
+        call \\
+        $args \\
+        -j ${task.cpus} \\
+        ${fasta} \\
+        ${svsig} \\
+        ${prefix}.vcf 
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":