Add result notebooks

open-life-science · Aug 5, 2024 · ffb8f13 · ffb8f13
1 parent c6bf3ac
commit ffb8f13
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Showing 55 changed files with 11,204 additions and 8 deletions.
diff --git a/.github/workflows/deploy-book.yml b/.github/workflows/deploy-book.yml
@@ -17,7 +17,7 @@ jobs:
       with:
         #  channels: conda-forge,defaults
         #  channel-priority: true
-        activate-environment: ols-stats
+        activate-environment: open-seeds-paper-2024
         environment-file: environment.yml
     - shell: bash -el {0}
       run: |

diff --git a/.gitignore b/.gitignore
@@ -11,4 +11,5 @@
 *.ipynb_checkpoints
 /.quarto/
 .DS_Store
-_build
+_build
+results/images/
diff --git a/_config.yml b/_config.yml
@@ -5,7 +5,7 @@ title: "Open Seeds: An inclusive training and mentoring program for Open Science
 author: OLS community
 logo: assets/images/ols-logo.png
 
-exclude_patterns: [_build, Thumbs.db, .DS_Store, "**.ipynb_checkpoints", results, README.md]
+exclude_patterns: [_build, Thumbs.db, .DS_Store, "**.ipynb_checkpoints", README.md]
 
 # Force re-execution of notebooks on each build.
 # See https://jupyterbook.org/content/execute.html

diff --git a/_toc.yml b/_toc.yml
@@ -4,11 +4,16 @@
 format: jb-book
 root: index
 parts:
+  - caption: Results
+    chapters:
+    - file: results/global_community-based_training_program
+    - file: results/training_materials_video_library
+    - file: results/overview_microgrant_honoraria_process
   - caption: Supplementary Data
     chapters:
-    - file: supplementary/supplementary-data-1-application-template.md
-    - file: supplementary/supplementary-data-2-review-rubric.md
-    - file: supplementary/supplementary-data-3-mid-term-participant-survey.md
-    - file: supplementary/supplementary-data-4-post-cohort-participant-survey.md
-    - file: supplementary/supplementary-data-5-post-cohort-mentor-survey.md
+    - file: supplementary/supplementary-data-1-application-template
+    - file: supplementary/supplementary-data-2-review-rubric
+    - file: supplementary/supplementary-data-3-mid-term-participant-survey
+    - file: supplementary/supplementary-data-4-post-cohort-participant-survey
+    - file: supplementary/supplementary-data-5-post-cohort-mentor-survey
 
diff --git a/data/country_alpha_2_continent.csv b/data/country_alpha_2_continent.csv
@@ -0,0 +1,246 @@
+Country,Continent
+"AB","Asia"
+"AD","Europe"
+"AE","Asia"
+"AF","Asia"
+"AG","North America"
+"AI","North America"
+"AL","Europe"
+"AM","Asia"
+"AO","Africa"
+"AR","South America"
+"AS","Oceania"
+"AT","Europe"
+"AU","Oceania"
+"AW","North America"
+"AX","Europe"
+"AZ","Asia"
+"BA","Europe"
+"BB","North America"
+"BD","Asia"
+"BE","Europe"
+"BF","Africa"
+"BG","Europe"
+"BH","Asia"
+"BI","Africa"
+"BJ","Africa"
+"BL","North America"
+"BM","North America"
+"BN","Asia"
+"BO","South America"
+"BQ","North America"
+"BR","South America"
+"BS","North America"
+"BT","Asia"
+"BV","Antarctica"
+"BW","Africa"
+"BY","Europe"
+"BZ","North America"
+"CA","North America"
+"CC","Asia"
+"CD","Africa"
+"CF","Africa"
+"CG","Africa"
+"CH","Europe"
+"CI","Africa"
+"CK","Oceania"
+"CL","South America"
+"CM","Africa"
+"CN","Asia"
+"CO","South America"
+"CR","North America"
+"CU","North America"
+"CV","Africa"
+"CW","North America"
+"CX","Asia"
+"CY","Asia"
+"CZ","Europe"
+"DE","Europe"
+"DJ","Africa"
+"DK","Europe"
+"DM","North America"
+"DO","North America"
+"DZ","Africa"
+"EC","South America"
+"EE","Europe"
+"EG","Africa"
+"ER","Africa"
+"ES","Europe"
+"ET","Africa"
+"FI","Europe"
+"FJ","Oceania"
+"FK","South America"
+"FM","Oceania"
+"FO","Europe"
+"FR","Europe"
+"GA","Africa"
+"GB","Europe"
+"GD","North America"
+"GE","Asia"
+"GF","South America"
+"GG","Europe"
+"GH","Africa"
+"GI","Europe"
+"GL","North America"
+"GM","Africa"
+"GN","Africa"
+"GP","North America"
+"GQ","Africa"
+"GR","Europe"
+"GS","South America"
+"GT","North America"
+"GU","Oceania"
+"GW","Africa"
+"GY","South America"
+"HK","Asia"
+"HM","Antarctica"
+"HN","North America"
+"HR","Europe"
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+"HU","Europe"
+"ID","Asia"
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+"IN","Asia"
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+"IQ","Asia"
+"IR","Asia"
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+"JM","North America"
+"JO","Asia"
+"JP","Asia"
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+"KG","Asia"
+"KH","Asia"
+"KI","Oceania"
+"KM","Africa"
+"KN","North America"
+"KP","Asia"
+"KR","Asia"
+"KW","Asia"
+"KY","North America"
+"KZ","Asia"
+"LA","Asia"
+"LB","Asia"
+"LC","North America"
+"LI","Europe"
+"LK","Asia"
+"LR","Africa"
+"LS","Africa"
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+"NC","Oceania"
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+"NF","Oceania"
+"NG","Africa"
+"NI","North America"
+"NL","Europe"
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+"NP","Asia"
+"NR","Oceania"
+"NU","Oceania"
+"NZ","Oceania"
+"OM","Asia"
+"OS","Asia"
+"PA","North America"
+"PE","South America"
+"PF","Oceania"
+"PG","Oceania"
+"PH","Asia"
+"PK","Asia"
+"PL","Europe"
+"PM","North America"
+"PR","North America"
+"PS","Asia"
+"PT","Europe"
+"PW","Oceania"
+"PY","South America"
+"QA","Asia"
+"RE","Africa"
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+"TP","Asia"
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+"TT","North America"
+"TV","Oceania"
+"TW","Asia"
+"TZ","Africa"
+"UA","Europe"
+"UG","Africa"
+"US","North America"
+"UY","South America"
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+"VG","North America"
+"VI","North America"
+"VN","Asia"
+"VU","Oceania"
+"WF","Oceania"
+"WS","Oceania"
+"XK","Europe"
+"YE","Asia"
+"YT","Africa"
+"ZA","Africa"
+"ZM","Africa"
+"ZW","Africa"