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    20 repositories

    • tomotwin-cryoet

      Public
      cryo-ET particle picking by representation and metric learning
      deep-learningmetric-learningcryo-emcryo-etparticle-picking
      Python
      •
      Mozilla Public License 2.0
      •6•30•10•0•Updated Oct 2, 2024Oct 2, 2024

    • napari-tomotwin

      Public
      Tool for the work with TomoTwin
      Python
      •
      Mozilla Public License 2.0
      •0•4•1•0•Updated Oct 2, 2024Oct 2, 2024

    • tem-simulator-scripts

      Public
      Scripts to simulation of Tomograms with the TEM Simulator easy.
      Python
      •
      Mozilla Public License 2.0
      •2•9•4•1•Updated Aug 12, 2024Aug 12, 2024

    • sphire-janni

      Public
      Just another noise 2 noise implementation (JANNI) with Keras
      deep-learningkerasnoise2noisesphire
      Jupyter Notebook
      •
      Other
      •3•3•0•3•Updated Aug 2, 2024Aug 2, 2024

    • sphire_classes_autoselect

      Public
      Simple binary classification tool for cryo-EM and cryo-ET
      Python
      •
      MIT License
      •0•4•0•2•Updated Aug 2, 2024Aug 2, 2024

    • napari-boxmanager

      Public
      Python
      •
      Mozilla Public License 2.0
      •0•3•11•0•Updated Jun 17, 2024Jun 17, 2024

    • cryodrgn

      Public
      Neural networks for cryo-EM reconstruction
      Python
      •
      GNU General Public License v3.0
      •75•0•0•0•Updated May 7, 2024May 7, 2024

    • cryolo

      Public
      cryolo documentation
      Python
      •1•9•6•0•Updated May 2, 2024May 2, 2024

    • pyStarDB

      Public
      Star file python package
      Python
      •
      MIT License
      •0•0•1•0•Updated Apr 3, 2024Apr 3, 2024

    • facility-autobadge

      Public
      facility-autobadge creates a traffic light system for facility devices on your gitlab repo startpage. The traffic light system gets automatically updated based on the issues in the issues list. In that way, all users of the facility know the current status of the devices.
      microscopyfacility-management
      Python
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • transphire

      Public
      Transphire: Cryo-EM on the fly processing pipeline
      cryo-em
      Python
      •
      GNU General Public License v3.0
      •2•9•0•0•Updated Nov 8, 2023Nov 8, 2023

    • pymissense

      Public
      PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
      deep-learningstructural-biologyprotein-structureprotein-sequencesuniprotprotein-structure-prediction
      Python
      •
      Mozilla Public License 2.0
      •0•22•3•0•Updated Oct 13, 2023Oct 13, 2023

    • LineEnhancer

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Aug 21, 2023Aug 21, 2023

    • transphire_transform

      Public
      Utilites to change between SPHIRE, RELION and to modify the data
      Python
      •
      MIT License
      •0•3•0•5•Updated Dec 8, 2022Dec 8, 2022

    • pyem

      Public
      Python programs for electron microscopy
      Python
      •
      GNU General Public License v3.0
      •52•0•0•0•Updated Dec 5, 2022Dec 5, 2022

    • IsoNet

      Public
      Python
      •
      MIT License
      •13•0•0•0•Updated Nov 7, 2022Nov 7, 2022

    • StarGUI

      Public
      Making star file manipulation easy with Pandas and a GUI
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 6, 2022Jul 6, 2022

    • ij_striper

      Public
      Java
      •0•0•0•2•Updated Apr 26, 2021Apr 26, 2021

    • sphire_tutorial

      Public
      Tutorial for the SPHIRE software suite
      TeX
      •0•0•0•0•Updated Sep 23, 2020Sep 23, 2020

    • striper

      Public
      Python
      •0•0•0•0•Updated Feb 18, 2020Feb 18, 2020