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    13 repositories

    • MnM

      Public
      R package for tumor classification - Kemmeren group
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • sturgeon-gui

      Public
      GUI front-end of the stugeon app
      Java
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • structuralvariation

      Public
      R
      •0•3•0•0•Updated Aug 27, 2024Aug 27, 2024

    • sturgeon

      Public
      Python
      •
      Other
      •8•0•0•1•Updated Aug 9, 2024Aug 9, 2024

    • network-filesystem-shares

      Public
      Repository of nfs4_share. This program uses NFSv4-mount properties to share data with other users that have access to the mount. It prevent data duplication and makes keeping track of permissions relatively easy.
      Python
      •
      MIT License
      •3•5•0•0•Updated Nov 15, 2023Nov 15, 2023

    • fusion-sq

      Public
      HTML
      •0•0•0•0•Updated Mar 17, 2022Mar 17, 2022

    • GI_InteractionTests

      Public
      Genetic Interaction tests used to detect mutually exclusive and co-occurring altered gene pairs in childhood cancers
      Shell
      •0•0•0•0•Updated Nov 30, 2021Nov 30, 2021

    • python_csr2transmart

      Public
      Scripts for converting CSR data to TranSMART
      Python
      •
      MIT License
      •3•0•0•0•Updated Jun 17, 2021Jun 17, 2021

    • GI_ReportingTool

      Public
      Genetic Interaction Reporting Tool to collect information of mutually exclusive and co-occurring altered gene pairs in childhood cancers
      R
      •0•0•0•0•Updated Jan 22, 2021Jan 22, 2021

    • MaxMultiQC

      Public
      Aggregate results from bioinformatics analyses across many samples into a single report.
      Python
      •
      GNU General Public License v3.0
      •602•0•0•0•Updated Apr 24, 2020Apr 24, 2020

    • MaxMultiQC_TestData

      Public
      Test data for MultiQC. See https://github.com/ewels/MultiQC
      HTML
      •
      MIT License
      •144•0•0•0•Updated Apr 24, 2020Apr 24, 2020

    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •360•0•0•0•Updated Apr 17, 2019Apr 17, 2019

    • molgenis-tools-emx-downloader

      Public
      Stand alone tool to download data in EMX format from molgenis servers
      Java
      •8•0•0•0•Updated Mar 28, 2019Mar 28, 2019