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Merge upstream #62

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@daniaki daniaki commented Feb 11, 2022

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dependabot bot and others added 25 commits August 6, 2021 11:16
@dependabot
Bump tar from 6.0.2 to 6.1.4 (#42)
1fc8fd2 
Bumps [tar](https://github.com/npm/node-tar) from 6.0.2 to 6.1.4.
- [Release notes](https://github.com/npm/node-tar/releases)
- [Changelog](https://github.com/npm/node-tar/blob/main/CHANGELOG.md)
- [Commits](isaacs/node-tar@v6.0.2...v6.1.4)

---
updated-dependencies:
- dependency-name: tar
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump path-parse from 1.0.6 to 1.0.7 (#43)
3a24ff1 
Bumps [path-parse](https://github.com/jbgutierrez/path-parse) from 1.0.6 to 1.0.7.
- [Release notes](https://github.com/jbgutierrez/path-parse/releases)
- [Commits](https://github.com/jbgutierrez/path-parse/commits/v1.0.7)

---
updated-dependencies:
- dependency-name: path-parse
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump url-parse from 1.5.1 to 1.5.3 (#44)
75fb975 
Bumps [url-parse](https://github.com/unshiftio/url-parse) from 1.5.1 to 1.5.3.
- [Release notes](https://github.com/unshiftio/url-parse/releases)
- [Commits](unshiftio/url-parse@1.5.1...1.5.3)

---
updated-dependencies:
- dependency-name: url-parse
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@nawatts
Remove duplicated field in ASC data pipeline
0208866
@nawatts
Add data pipeline to prepare download files
f9627e0
@nawatts
Add downloads page
e5b573c
@nawatts
Link to files on AWS from downloads page
117df66
@dependabot
Bump tar from 6.1.4 to 6.1.11 (#45)
cd8da47 
Bumps [tar](https://github.com/npm/node-tar) from 6.1.4 to 6.1.11.
- [Release notes](https://github.com/npm/node-tar/releases)
- [Changelog](https://github.com/npm/node-tar/blob/main/CHANGELOG.md)
- [Commits](isaacs/node-tar@v6.1.4...v6.1.11)

---
updated-dependencies:
- dependency-name: tar
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@nawatts
Update Ingress manifest to new K8S API
a67428d
@nawatts
Update qq-plot
34a84d2
@nawatts
Name build stage in Dockerfile
41cab7b
@nawatts
Update version of Node.js used in Docker image
ea41f8b
@nawatts
Move markdown-loader to dev dependencies
674bfd3
@nawatts
Add note about downloads files generated by data pipeline
c01d631
@nawatts
Update URLs of gnomAD reference data
535e17d
@nawatts
Document process to copy results files to persistent disk
d38d854 
The previous script no longer works due to IAM changes
@nawatts
Update BipEx data
d4c2101
@nawatts
Format
71d4d76
@nawatts
Manage SSL certificate outside of K8S
ff3757a
@nawatts
Add pre-commit configuration
d4353a2
@nawatts
Add notes about setting up a development environment
3486769
@nawatts
Move Pylint configuration to pyproject.toml
df3fc0a
@nawatts
Configure load balancer to redirect HTTP to HTTPS
bf6c8fc
@nawatts
Fix get gene endpoint
6b7f163
@dependabot
Bump follow-redirects from 1.12.1 to 1.14.7 (#46)
a4ebbcc 
Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.12.1 to 1.14.7.
- [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
- [Commits](follow-redirects/follow-redirects@v1.12.1...v1.14.7)

---
updated-dependencies:
- dependency-name: follow-redirects
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@daniaki daniaki self-assigned this Feb 11, 2022
rileyhgrant and others added 30 commits January 23, 2023 11:35
@rileyhgrant
Update browser for new Epi25 data
904622f
@rileyhgrant
Modify dockerfiles to build images correctly on arm64 architecture ma…
9a768a0 
…chines
@rileyhgrant
Modify Epi25 browser per comments
e436dfc
@rileyhgrant
Add info to readme on updating browser deployment
8db2fbb
@rileyhgrant
Modify Epi25 pLoF label to Protein-truncating
87c5841
@dependabot @rileyhgrant
Bump express from 4.17.1 to 4.17.3
a33f1b0 
Bumps [express](https://github.com/expressjs/express) from 4.17.1 to 4.17.3.
- [Release notes](https://github.com/expressjs/express/releases)
- [Changelog](https://github.com/expressjs/express/blob/master/History.md)
- [Commits](expressjs/express@4.17.1...4.17.3)

---
updated-dependencies:
- dependency-name: express
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot @rileyhgrant
Bump decode-uri-component from 0.2.0 to 0.2.2
a65c452 
Bumps [decode-uri-component](https://github.com/SamVerschueren/decode-uri-component) from 0.2.0 to 0.2.2.
- [Release notes](https://github.com/SamVerschueren/decode-uri-component/releases)
- [Commits](SamVerschueren/decode-uri-component@v0.2.0...v0.2.2)

---
updated-dependencies:
- dependency-name: decode-uri-component
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot @rileyhgrant
Bump ua-parser-js from 0.7.28 to 0.7.33
79b54ab 
Bumps [ua-parser-js](https://github.com/faisalman/ua-parser-js) from 0.7.28 to 0.7.33.
- [Release notes](https://github.com/faisalman/ua-parser-js/releases)
- [Changelog](https://github.com/faisalman/ua-parser-js/blob/master/changelog.md)
- [Commits](faisalman/ua-parser-js@0.7.28...0.7.33)

---
updated-dependencies:
- dependency-name: ua-parser-js
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot @rileyhgrant
Bump minimatch from 3.0.4 to 3.1.2
7d28def 
Bumps [minimatch](https://github.com/isaacs/minimatch) from 3.0.4 to 3.1.2.
- [Release notes](https://github.com/isaacs/minimatch/releases)
- [Changelog](https://github.com/isaacs/minimatch/blob/main/changelog.md)
- [Commits](isaacs/minimatch@v3.0.4...v3.1.2)

---
updated-dependencies:
- dependency-name: minimatch
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot @rileyhgrant
Bump terser from 4.8.0 to 4.8.1
15334e7 
Bumps [terser](https://github.com/terser/terser) from 4.8.0 to 4.8.1.
- [Release notes](https://github.com/terser/terser/releases)
- [Changelog](https://github.com/terser/terser/blob/master/CHANGELOG.md)
- [Commits](https://github.com/terser/terser/commits)

---
updated-dependencies:
- dependency-name: terser
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot @rileyhgrant
Bump async from 2.6.3 to 2.6.4
6e0451b 
Bumps [async](https://github.com/caolan/async) from 2.6.3 to 2.6.4.
- [Release notes](https://github.com/caolan/async/releases)
- [Changelog](https://github.com/caolan/async/blob/v2.6.4/CHANGELOG.md)
- [Commits](caolan/async@v2.6.3...v2.6.4)

---
updated-dependencies:
- dependency-name: async
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot @rileyhgrant
Bump url-parse from 1.5.3 to 1.5.10
89429e7 
Bumps [url-parse](https://github.com/unshiftio/url-parse) from 1.5.3 to 1.5.10.
- [Release notes](https://github.com/unshiftio/url-parse/releases)
- [Commits](unshiftio/url-parse@1.5.3...1.5.10)

---
updated-dependencies:
- dependency-name: url-parse
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot @rileyhgrant
Bump ajv from 6.12.2 to 6.12.6
66207f5 
Bumps [ajv](https://github.com/ajv-validator/ajv) from 6.12.2 to 6.12.6.
- [Release notes](https://github.com/ajv-validator/ajv/releases)
- [Commits](ajv-validator/ajv@v6.12.2...v6.12.6)

---
updated-dependencies:
- dependency-name: ajv
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
@rileyhgrant
Update Epi25 email
1d7e2ca
@rileyhgrant
Update link to Epi25 paper preprint
2cc460d
@rileyhgrant
Update terms page link to Epi25 paper preprint
33aae1b
@sjahl
update deployment values for new cluster
f4207c1
@sjahl
Merge pull request #77 from broadinstitute/new-infra
9e23f3a 
update deployment values for new cluster
@sjahl
remove the now obsolete add-to-project action
a29a611
@dependabot
Bump word-wrap from 1.2.3 to 1.2.5 (#82)
438f87e 
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@mattsolo1 @rileyhgrant
Update pipeline files for IBD browser (#85)
aee0519 
Co-authored-by: Riley Grant <grantrileyh@gmail.com>
@sjahl
Add kustomization for ERB deployments (#89)
e597dd5
@sjahl
update docker image URLs to artifact registry (#90)
f9e0e23
@sjahl
adds additional dependabot configuration for our other ecosystems
81dfe61
@dependabot
Bump the npm_and_yarn group with 7 updates (#91)
b80f4f7
@sjahl
Add a cloudbuild configuration for building the docker image and prop…
bdf5f2f 
…agating the new tag to a kubernetes manifest (#92)
@sjahl
use simpler image name for deployment spec updates
a259229
@rileyhgrant
chore(frontend): update Epi25 paper
cc91ea9
@rileyhgrant
chore(app): add .tool-versions file, update CI tool versions
ac93d9a
@rileyhgrant
feat(frontend): Update Epi25 paper
6c158ff
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@daniaki @nawatts @sjahl @mattsolo1 @rileyhgrant