debug logging in gCNV

populationgenomics · Oct 28, 2024 · e81db47 · e81db47
1 parent 585d1fd
commit e81db47
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cpg_workflows/stages/gcnv.py b/cpg_workflows/stages/gcnv.py
@@ -357,7 +357,7 @@ def queue_jobs(self, cohort: Cohort, inputs: StageInput) -> StageOutput:
                 get_logger().info(f'Using XY-trimmed VCF for {sgid}')
                 all_vcfs.append(str(trimmed_vcfs[sgid]))
             elif sgid in cnv_vcfs:
-                get_logger().warning(f'Using standard VCF for {sgid}')
+                get_logger().debug(f'Using standard VCF for {sgid}')
                 all_vcfs.append(str(cnv_vcfs[sgid]['segments']))
             else:
                 raise ValueError(f'No VCF found for {sgid}')