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Sites table generation #692
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Commits on Apr 16, 2024
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Commits on Apr 17, 2024
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not using get_qc_mt() as no control of ld_pruning base pair window si…
…ze. Filtering according to gnomAD parameters manually after performing hl.variant_qc()
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Commits on May 1, 2024
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Commits on May 2, 2024
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downsampling variant sites prior to ld-pruning. Without this step, th…
…e exome_pruned_variants had more variants than the pruned_variants sites table that Kat generated with WGS
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Changing checkpointing and writing directories to test instead of tes…
…t-tmp when building sites_table using the main version of the background_vds
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Commits on May 3, 2024
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Commits on May 6, 2024
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Running out of memory. Increasing the driver memory to high, and incr…
…easing the number of cores to 4 as it is a driver job that is failing
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