fm_etrs

populationgenomics · Oct 21, 2024 · 686ebcf · 686ebcf
1 parent 6c58747
commit 686ebcf
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/str/annotate/bedtools_intersector.py b/str/annotate/bedtools_intersector.py
@@ -13,7 +13,7 @@
 from cpg_utils.hail_batch import get_batch, output_path
 
 CATALOG_PATH = 'gs://cpg-bioheart-test/str/ncAnnot.v0.14.jul2024.bed'
-TR_PATH = 'gs://cpg-bioheart-test/str/arthur/eTRs.bed'
+TR_PATH = 'gs://cpg-bioheart-test/str/arthur/fm_eTRs.bed'
 
 
 # Initializing Batch
@@ -34,6 +34,6 @@
 bedtools_job.command(f'bedtools intersect -a {tr} -b {catalog} -wo > {bedtools_job.ofile}')
 
 # write output to GCP bucket for this dataset
-b.write_output(bedtools_job.ofile, 'gs://cpg-bioheart-test/str/arthur/eTRs_intersect.bed')
+b.write_output(bedtools_job.ofile, 'gs://cpg-bioheart-test/str/arthur/fm_eTRs_intersect.bed')
 
 b.run(wait=False)