adjustment to missing participants in pedigree generation

populationgenomics · Aug 22, 2023 · 62d0c66 · 62d0c66
1 parent 36f1840
commit 62d0c66
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/helpers/prepare_aip_cohort.py b/helpers/prepare_aip_cohort.py
@@ -219,7 +219,9 @@ def process_pedigree(
     ped_lines = []
     for entry in ped_with_permutations:
         for sample, mother, father in product(
-            entry['individual_id'], entry['paternal_id'], entry['maternal_id']
+            entry['individual_id'],
+            entry['paternal_id'] or ['0'],
+            entry['maternal_id'] or ['0'],
         ):
             ped_lines.append(
                 '\t'.join(