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MattWellie committed Aug 5, 2024
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1 change: 1 addition & 0 deletions src/talos/HPOFlagging.py
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Expand Up @@ -83,6 +83,7 @@ def find_genes_in_these_results(result_object: ResultData) -> set[str]:
ensgs.add(variant.var_data.info['gene_id'])

# for structural variants, add all the LOF'd genes
# TODO (mwelland): if/when we create other SV categories, we may need to catch those here too
if lof := variant.var_data.info.get('predicted_lof'):
ensgs.update(set(lof.split(',')))

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