try more debugging

query_metamist.py

@@ -1,8 +1,8 @@
 from argparse import ArgumentParser
 from typing import Any
 
-from cpg_utils.config import get_config
-from cpg_utils.hail_batch import Batch, command, get_batch, image_path, output_path
+from cpg_utils.config import get_config, image_path, output_path
+from cpg_utils.hail_batch import Batch, command, get_batch
 from graphql import DocumentNode
 from hailtop.batch.job import BashJob
 
@@ -36,7 +36,7 @@ def get_assays(project: str, sgids: list[str]) -> dict[str, list[str]]:
     Returns:
         dict: A dictionary where each key is a sequencing group ID and each value is a list of read locations for that sequencing group.
     """
-    sg_assay_map = {}
+    sg_assay_map: dict[str, list[str]] = {}
 
     # Use the query template above to query the sequencing groups and assays
     query_response: dict[str, Any] = query(
@@ -93,8 +93,6 @@ def main(project: str, sgids: list[str], last_name: str):
     for sg, files in file_dict.items():
         assert len(files) == 2
 
-        print(f"{sg}: {files}")
-
         j: BashJob = b.new_job(name="FastQE", attributes={"tool": "fastqe"})
         j.image(image_path("fastqe"))
         j.storage("2Gi")