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Migrate tests/test_maamped.py to npt.assert_allclose #1199

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Merged
seanlaw merged 1 commit into from
Aug 25, 2026
+32 −32
Merged

Migrate tests/test_maamped.py to npt.assert_allclose #1199

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64 changes: 32 additions & 32 deletions tests/test_maamped.py
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Original file line number Diff line number Diff line change
Expand Up @@ -46,10 +46,10 @@ def test_maamped(T, m, dask_cluster):
excl_zone = int(np.ceil(m / 4))

ref_P, ref_I = naive.maamp(T, m, excl_zone)
comp_P, comp_I = maamped(dask_client, T, m)
cmp_P, cmp_I = maamped(dask_client, T, m)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -63,10 +63,10 @@ def test_maamped_include(T, m, dask_cluster):
excl_zone = int(np.ceil(m / 4))

ref_P, ref_I = naive.maamp(T, m, excl_zone, include)
comp_P, comp_I = maamped(dask_client, T, m, include)
cmp_P, cmp_I = maamped(dask_client, T, m, include)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -76,10 +76,10 @@ def test_maamped_discords(T, m, dask_cluster):
excl_zone = int(np.ceil(m / 4))

ref_P, ref_I = naive.maamp(T, m, excl_zone, discords=True)
comp_P, comp_I = maamped(dask_client, T, m, discords=True)
cmp_P, cmp_I = maamped(dask_client, T, m, discords=True)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -93,10 +93,10 @@ def test_maamped_include_discords(T, m, dask_cluster):
excl_zone = int(np.ceil(m / 4))

ref_P, ref_I = naive.maamp(T, m, excl_zone, include, discords=True)
comp_P, comp_I = maamped(dask_client, T, m, include, discords=True)
cmp_P, cmp_I = maamped(dask_client, T, m, include, discords=True)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -107,10 +107,10 @@ def test_maamped_df(T, m, dask_cluster):

ref_P, ref_I = naive.maamp(T, m, excl_zone)
df = pd.DataFrame(T.T)
comp_P, comp_I = maamped(dask_client, df, m)
cmp_P, cmp_I = maamped(dask_client, df, m)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -125,9 +125,9 @@ def test_maamped_constant_subsequence_self_join(dask_cluster):
excl_zone = int(np.ceil(m / 4))

ref_P, ref_I = naive.maamp(T, m, excl_zone)
comp_P, comp_I = maamped(dask_client, T, m)
cmp_P, cmp_I = maamped(dask_client, T, m)

npt.assert_almost_equal(ref_P, comp_P) # ignore indices
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07) # ignore indices


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -143,10 +143,10 @@ def test_maamped_identical_subsequence_self_join(dask_cluster):
excl_zone = int(np.ceil(m / 4))

ref_P, ref_I = naive.maamp(T, m, excl_zone)
comp_P, comp_I = maamped(dask_client, T, m)
cmp_P, cmp_I = maamped(dask_client, T, m)

npt.assert_almost_equal(
ref_P, comp_P, decimal=config.STUMPY_TEST_PRECISION
npt.assert_allclose(
cmp_P, ref_P, atol=1.5 * 10**-config.STUMPY_TEST_PRECISION
) # ignore indices


Expand All @@ -163,10 +163,10 @@ def test_maamped_one_subsequence_inf_self_join_first_dimension(
T_sub[0, substitution_location] = np.inf

ref_P, ref_I = naive.maamp(T_sub, m, excl_zone)
comp_P, comp_I = maamped(dask_client, T_sub, m)
cmp_P, cmp_I = maamped(dask_client, T_sub, m)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -182,10 +182,10 @@ def test_maamped_one_subsequence_inf_self_join_all_dimensions(
T_sub[:, substitution_location] = np.inf

ref_P, ref_I = naive.maamp(T_sub, m, excl_zone)
comp_P, comp_I = maamped(dask_client, T_sub, m)
cmp_P, cmp_I = maamped(dask_client, T_sub, m)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -201,10 +201,10 @@ def test_maamped_one_subsequence_nan_self_join_first_dimension(
T_sub[0, substitution_location] = np.nan

ref_P, ref_I = naive.maamp(T_sub, m, excl_zone)
comp_P, comp_I = maamped(dask_client, T_sub, m)
cmp_P, cmp_I = maamped(dask_client, T_sub, m)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)


@pytest.mark.filterwarnings("ignore:\\s+Port 8787 is already in use:UserWarning")
Expand All @@ -220,7 +220,7 @@ def test_maamped_one_subsequence_nan_self_join_all_dimensions(
T_sub[:, substitution_location] = np.nan

ref_P, ref_I = naive.maamp(T_sub, m, excl_zone)
comp_P, comp_I = maamped(dask_client, T_sub, m)
cmp_P, cmp_I = maamped(dask_client, T_sub, m)

npt.assert_almost_equal(ref_P, comp_P)
npt.assert_almost_equal(ref_I, comp_I)
npt.assert_allclose(cmp_P, ref_P, atol=1.5e-07)
npt.assert_allclose(cmp_I, ref_I, atol=1.5e-07)
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