Anlysis of small RNAs in Arabidopsis SWR1 mutant (published in Choi et al. 2016, Plant Physiology, http://www.plantphysiol.org/content/171/2/1128)

Clustering of 1,135 Arabidopsis thaliana genomes from 1001 Genomes Project (https://1001genomes.org/)

Regularly updated version of `org.At.tair.db`.

Python scripts related to the At7 sequencing project

Arabidopsis EcoGEx (R-📦 + 🕸️-App)

Analysis of transcriptomic dataset of A. thaliana Multi Protein Bridging Factor 1c knockout

Nextflow pipeline for SNPmatch (https://github.com/Gregor-Mendel-Institute/SNPmatch.git)

🌱🧬 Collection of scripts for the paper: 📑 "Characterization of Arabidopsis thaliana Promoter Bidirectionality and Antisense RNAs by Inactivation of Nuclear RNA Decay Pathways" (The Plant Cell 2020; PMID 32213639 🔗)

🌱🧬 Collection of scripts for the paper: "PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave" (The Plant Cell 2022; PMID 35404429 🔗)

A pipeline to analyse small RNA expression using Illumina sequencing data

Interactive Functional Annotations Dashboard

Genomic prediction of amino acid traits in Arabidopsis seeds

Gene ID Retrieval from TAIR: R code to retrieve gene IDs from TAIR (The Arabidopsis Information Resource) and export them as CSV files

A website to explore biological relationships between Arabidopsis thailiana genetic characteristics.

An automated pipeline for analyzing arabidopsis luciferase imaging data

A simple python library to identify the most likely strain from the population

A data visualization tool to display tissue expression data for Arabidopsis thaliana

phylogenomics analysis for arabidopsis maf-cap genes

ease of access gff files from tair for reading tair ids.

easing your access to arabidopsis tair