Investigating the gut virus communities associated with colon cancer.

iGEM 19 Synthetic Biology

Fast and accurate whole-genome clustering of (actino) bacteriophages

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

The art of decorating a phage genome by gluing feature cutouts into it.

Code and data for the analysis of TF-binding sites positional entropy in phage genomes, used in Mascolo et al. (2022)

The PhageBox is a digital microfluidics device that integrates temperature and magnetic control modules at the hardware level. This repository contains the embedded software which contains a finite state machine for representing PCR and a graphical user interface for visual feedback and operation.

Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.

PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.

Phigaro is a scalable command-line tool for predicting phages and prophages

PhageOrder is a python package designed to reorder phage genomes based on its terminase subunit.

Code and data used to perform the tAI analysis in deCarvalho et al. (2023)

Phage-Host Interaction Search Tool

WtP: Phage identification via nextflow and docker or singularity

Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes