Access to Biological Web Services from Python.

Python Client Package for WikiPathways

The main web site for the WikiPathways project.

GPML2RDF converter

Mapping WikiPathways to chromosomes

Ready-to-use curated genesets for cinaR

Integration of pathway-related information from WikiPathways in BEL

WikiPathways Database

Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.

Converts Reactome pathways to GPML format

Queries for the WikiPathways SPARQL endpoint.

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…

A compilation of pathway gene sets

WikiPathways Summit Planning

Bioclipse plugins for WikiPathways and PathVisio

Project to convert content of WPRDF into nanopublications.

This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.

WikiPathways SPARQL Book

#metawinterschool contribution by BiGCaT

R client package for the WikiPathways API.