Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
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Updated
Jun 20, 2019
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gene-set-enrichment-analysis
Here are 9 public repositories matching this topic...
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
bam-files
rna-seq
r
script
deseq2
rna-seq-analysis
kegg
wikipathways
reactome
ora
geneontology
gsea
rna-seq-pipeline
reactome-pathway
differentially-expressed-genes
clusterprofiler
deseq2-analysis
gene-set-enrichment-analysis
diseaseontology
over-rapresentation-analysis
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Updated
Apr 14, 2023 - Jupyter Notebook
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
gene-sets
r
shiny
gene-expression
enrichment-analysis
gene-expression-signatures
gsea
pathway-enrichment-analysis
gene-set-enrichment-analysis
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Updated
Oct 18, 2023 - HTML
Role of CXCL9/10/11, CXCL13 and XCL1 in recruitment and suppression of cytotoxic T cells in renal cell carcinoma
cancer
monte-carlo-simulation
metabolism
transcriptome
renal
immune
tcell
semi-supervised-clustering
tumor-immunogenicity
gene-set-enrichment-analysis
immune-checkpoint
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Updated
Mar 20, 2023 - R
Snakemake pipeline to benchmark 11 functional pathway annotation systems
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Updated
Jun 30, 2022 - Python
Gene set enrichment analysis from scRNA seq data : in search of the original tissue
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Updated
Apr 19, 2022 - R
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
survival-analysis
signaling-pathways
collagen
differential-gene-expression
metabolic-models
prostate-cancer
semi-supervised-clustering
gradient-boosted-machines
gene-ontology-terms
gene-set-enrichment-analysis
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Updated
Feb 26, 2024 - R
The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.
bioinformatics
rna-seq
r
cancer
gene-expression
gene-ontology
edger
limma
gsea
multidimensional-scaling
gene-set-enrichment-analysis
tasmanian-devil
edaseq
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Updated
Aug 6, 2024 - TeX
Assessing the effectiveness of endocrine therapy in breast cancer using RNAseq data
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Updated
Apr 19, 2022 - R
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