KNIME nodes for WikiPathways.

This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.

WikiPathways Summit Planning

Repository for code to create the Europe PMC external links

R client package for the WikiPathways API.

Collect chemical reactions from a GPML file and look for matching Rhea equations.

Ready-to-use curated genesets for cinaR

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…

OpenAPI to extract information from WikiPathways.

Project to convert content of WPRDF into nanopublications.

Integration of pathway-related information from WikiPathways in BEL

Mapping WikiPathways to chromosomes

Queries for the WikiPathways SPARQL endpoint.

#metawinterschool contribution by BiGCaT

GPML2RDF converter

WikiPathways SPARQL Book

Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.

A compilation of pathway gene sets

Bioclipse plugins for WikiPathways and PathVisio

Python Client Package for WikiPathways