Collect chemical reactions from a GPML file and look for matching Rhea equations.

KNIME nodes for WikiPathways.

OpenAPI to extract information from WikiPathways.

Repository for code to create the Europe PMC external links

#metawinterschool contribution by BiGCaT

This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.

WikiPathways SPARQL Book

R client package for the WikiPathways API.

Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.

Converts Reactome pathways to GPML format

Queries for the WikiPathways SPARQL endpoint.

A compilation of pathway gene sets

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…

WikiPathways Summit Planning

Project to convert content of WPRDF into nanopublications.

Bioclipse plugins for WikiPathways and PathVisio

Mapping WikiPathways to chromosomes

Ready-to-use curated genesets for cinaR

WikiPathways Database

Integration of pathway-related information from WikiPathways in BEL