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Increase Memory to 20GB #1

Closed
wants to merge 34 commits into from
Closed

Increase Memory to 20GB #1

wants to merge 34 commits into from

Commits on Apr 28, 2023

  1. Add several tools from usegalaxy.eu

    @mira-miracoli @kysrpex
    mira-miracoli authored and kysrpex committed Apr 28, 2023
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  2. Add several tools from usegalaxy.eu

    @sanjaysrikakulam @kysrpex
    sanjaysrikakulam authored and kysrpex committed Apr 28, 2023
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  3. Add several tools from usegalaxy.eu

    @kysrpex
    kysrpex committed Apr 28, 2023
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  4. Propose resolution for tools for which issues were observed

    @kysrpex
    kysrpex committed Apr 28, 2023
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  5. Run tpv format

    @kysrpex
    kysrpex committed Apr 28, 2023
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Commits on May 2, 2023

  1. Fix indentation

    @kysrpex
    kysrpex committed May 2, 2023
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  2. Remove duplicate `toolshed.g2.bx.psu.edu/repos/bgruening/deeptools/de… 

    …eptools_bamCorrelate/.*`
    @kysrpex
    kysrpex committed May 2, 2023
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  3. Remove duplicate `toolshed.g2.bx.psu.edu/repos/galaxyp/proteomics_mof… 

    …f/proteomics_moff/.*`
    @kysrpex
    kysrpex committed May 2, 2023
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  4. Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_red… 

    …uce_dimension/scanpy_cluster_reduce_dimension/.*`
    @kysrpex
    kysrpex committed May 2, 2023
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  5. Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scan… 

    …py_filter/.*`
    @kysrpex
    kysrpex committed May 2, 2023
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  6. Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_inspect/sca… 

    …npy_inspect/.*`
    @kysrpex
    kysrpex committed May 2, 2023
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  7. Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/s… 

    …canpy_normalize/.*`
    @kysrpex
    kysrpex committed May 2, 2023
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  8. Remove duplicate `toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam… 

    …2wig/.*`
    @kysrpex
    kysrpex committed May 2, 2023
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  9. Remove duplicate toolshed.g2.bx.psu.edu/repos/iuc/gubbins/gubbins/.*

    @kysrpex
    kysrpex committed May 2, 2023
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  10. Run tpv format again, with correct indentation

    @kysrpex
    kysrpex committed May 2, 2023
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  11. use cores for num_threads ENVs

    @bgruening
    bgruening authored May 2, 2023
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  12. Apply suggestions from code review

    @bgruening
    bgruening authored May 2, 2023
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  13. Merge pull request #19 from kysrpex/usegalaxy_eu 

    Add tools from usegalaxy.eu
    @cat-bro
    cat-bro authored May 2, 2023
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Commits on May 3, 2023

  1. Remove -XX:MaxPermSize from _JAVA_OPTIONS for all tools

    @cat-bro
    cat-bro committed May 3, 2023
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  2. Merge pull request #22 from cat-bro/remove-maxpermsize-from-java-options 

    Remove -XX:MaxPermSize from _JAVA_OPTIONS for all tools
    @cat-bro
    cat-bro authored May 3, 2023
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Commits on May 24, 2023

  1. input_size based rules for anndata_import tool

    @pavanvidem
    pavanvidem committed May 24, 2023
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Commits on Jun 10, 2023

  1. Fix antismash ID regex

    @cat-bro
    cat-bro authored Jun 10, 2023
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  2. Pin galaxy-app <= 22.1.1 in linter requirements

    @cat-bro
    cat-bro authored Jun 10, 2023
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  3. Merge pull request #27 from galaxyproject/cat-bro-patch-2 

    Pin galaxy-app <= 22.1.1 in linter requirements
    @nuwang
    nuwang authored Jun 10, 2023
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  4. Merge pull request #26 from galaxyproject/cat-bro-patch-1 

    Fix antismash ID regex
    @nuwang
    nuwang authored Jun 10, 2023
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Commits on Jun 16, 2023

  1. Merge branch 'galaxyproject:main' into anndata-mem

    @pavanvidem
    pavanvidem authored Jun 16, 2023
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  2. set anndata import based on input_size

    @pavanvidem
    pavanvidem committed Jun 16, 2023
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  3. Merge branch 'anndata-mem' of github.com:pavanvidem/tpv-shared-databa… 

    …se into anndata-mem
    @pavanvidem
    pavanvidem committed Jun 16, 2023
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Commits on Jun 19, 2023

  1. add a rule

    @pavanvidem
    pavanvidem committed Jun 19, 2023
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  2. remove rule

    @pavanvidem
    pavanvidem committed Jun 19, 2023
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Commits on Jun 20, 2023

  1. Reduce allocation for featurecounts to 2c 8g

    @cat-bro
    cat-bro authored Jun 20, 2023
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  2. Merge pull request #24 from pavanvidem/anndata-mem 

    input_size based rules for anndata_import tool
    @cat-bro
    cat-bro authored Jun 20, 2023
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  3. Merge pull request #29 from galaxyproject/cat-bro-patch-1 

    Reduce allocation for featurecounts to 2c 8g
    @bgruening
    bgruening authored Jun 20, 2023
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Commits on Jul 11, 2023

  1. Merge pull request #31 from usegalaxy-eu/pepquery2 

    add pepquery2
    @nuwang
    nuwang authored Jul 11, 2023
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