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Increase Memory to 20GB #1

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Increase Memory to 20GB #1

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01d0ff1
Add several tools from usegalaxy.eu
mira-miracoli Apr 28, 2023
9291557
Add several tools from usegalaxy.eu
sanjaysrikakulam Apr 28, 2023
f0c956e
Add several tools from usegalaxy.eu
kysrpex Apr 28, 2023
70073f4
Propose resolution for tools for which issues were observed
kysrpex Apr 28, 2023
fc09a95
Run `tpv format`
kysrpex Apr 28, 2023
b5c82c8
Fix indentation
kysrpex May 2, 2023
635b61c
Remove duplicate `toolshed.g2.bx.psu.edu/repos/bgruening/deeptools/de…
kysrpex May 2, 2023
d6e0abb
Remove duplicate `toolshed.g2.bx.psu.edu/repos/galaxyp/proteomics_mof…
kysrpex May 2, 2023
0f26b31
Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_red…
kysrpex May 2, 2023
1af2fa3
Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scan…
kysrpex May 2, 2023
c3e2e5e
Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_inspect/sca…
kysrpex May 2, 2023
2bd50b7
Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/s…
kysrpex May 2, 2023
747462c
Remove duplicate `toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam…
kysrpex May 2, 2023
e6ae636
Remove duplicate `toolshed.g2.bx.psu.edu/repos/iuc/gubbins/gubbins/.*`
kysrpex May 2, 2023
b73904e
Run `tpv format` again, with correct indentation
kysrpex May 2, 2023
7dac710
use cores for num_threads ENVs
bgruening May 2, 2023
e0738ca
Apply suggestions from code review
bgruening May 2, 2023
24fdb39
Merge pull request #19 from kysrpex/usegalaxy_eu
cat-bro May 2, 2023
c33d9b2
Remove -XX:MaxPermSize from _JAVA_OPTIONS for all tools
cat-bro May 3, 2023
fe3ba41
Merge pull request #22 from cat-bro/remove-maxpermsize-from-java-options
cat-bro May 3, 2023
160a8de
input_size based rules for anndata_import tool
pavanvidem May 24, 2023
0baac51
Fix antismash ID regex
cat-bro Jun 10, 2023
8df757e
Pin galaxy-app <= 22.1.1 in linter requirements
cat-bro Jun 10, 2023
0f7bbe3
Merge pull request #27 from galaxyproject/cat-bro-patch-2
nuwang Jun 10, 2023
510d7d3
Merge pull request #26 from galaxyproject/cat-bro-patch-1
nuwang Jun 10, 2023
8826cb5
Merge branch 'galaxyproject:main' into anndata-mem
pavanvidem Jun 16, 2023
01fae24
set anndata import based on input_size
pavanvidem Jun 16, 2023
3628ea3
Merge branch 'anndata-mem' of github.com:pavanvidem/tpv-shared-databa…
pavanvidem Jun 16, 2023
cd8139d
add a rule
pavanvidem Jun 19, 2023
1933358
remove rule
pavanvidem Jun 19, 2023
ad214e6
Reduce allocation for featurecounts to 2c 8g
cat-bro Jun 20, 2023
4d85cb0
Merge pull request #24 from pavanvidem/anndata-mem
cat-bro Jun 20, 2023
b6c012a
Merge pull request #29 from galaxyproject/cat-bro-patch-1
bgruening Jun 20, 2023
77704f3
Merge pull request #31 from usegalaxy-eu/pepquery2
nuwang Jul 11, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
total-perspective-vortex
pyyaml
galaxy-app
galaxy-app<=22.1.1
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