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Realease Notes (CTF)
Yuming Liu edited this page May 22, 2020
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- Add parallel computing for the fiber extraction of multiple images or image stack(s).
- Add the ROI manager for defining the region of interest in an image.
- Add ROI analysis for post-processing CT-FIRE results of individual image.
- Add ROI analysis for running CT-FIRE on the defined ROIs of individual image.
- Add ROI analysis and ROI post-processing for multiple images.
- Add a colormap for visualizing the fiber properties in the advanced output module.
- Optimize the graphical user interface to make it more intuitive.
- Add the multiple stacks analysis in the advanced output module.
Primary changes were the addition of the advanced output control module including the following functions:
- Manually look up the fiber properties and remove the over-segmented fibers.
- Automatically select fibers by use of one threshold condition or combined conditions including the absolute or relative limits of fiber width, length, angle and straightness.
- Output a variety of statistic measures of the selected fibers obtained from (2) as well as the option to output raw data and overlaid images of them.
- Analyze the selected fibers in a single image/stack or in multiple images and visualize the associated statistics. Other changes included:
- Batch-mode fiber extraction for stacks.
- Improved width calculation and the option to output the maximum width of each fiber.
- Option to estimate the number of bins for the histogram based on the number of fibers.
- Control the output image resolution and improve .MAT file loading function. Fixed bug to load and update the existing fiber extraction parameters; and save the fiber properties of selected fibers into different sheets of one excel file.
- Add batch mode fiber extraction for both multiple image files and .mat files, image stack fiber extraction, post-processing for both single image output, single fiber extraction results ".mat" file and multiple fiber extraction results ".mat" files.
- Add the features of outputting non-overlaid extracted fiber image, fiber straightness, and fiber width besides fiber length and fiber angle.
- In addition, add the button to load parameters in .csv files as well as to update and save the updated parameters for ctFIRE in .csv format.
Fiber extraction for a single image