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22 Open 101 Closed
22 Open 101 Closed
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Issues list

DESeq2 checkFullRank() fails with no directions where to look
#146 opened Jun 28, 2024 by smoe
3
record_annotation_files uses uncaptured tools
#145 opened May 29, 2024 by rekado
1
Changing the cDNA fasta should not trigger rerun of hisat2 branch
#142 opened Apr 23, 2024 by alexg9010
Local build of pipeline fails to run on cluster
#141 opened Apr 4, 2024 by alexg9010
2
Pandoc error when running using cluster submission
#137 opened Apr 3, 2024 by alexg9010
6
salmon results show no gene names - with latest guix rnaseq 0.1
#130 opened Sep 30, 2022 by smoe
6
add a module for gene-set enrichment analysis enhancement
#129 opened Apr 12, 2022 by borauyar
suggesting runtime tests
#126 opened Mar 31, 2022 by smoe
4
Allow pre-built genome indices as input wishlist
#100 opened Aug 13, 2021 by borauyar
Analysis name in "DEanalyses" section must be quoted sanity_check sanity checks for robust execution - abort early with meaningful messages
#99 opened Aug 11, 2021 by rekado
1
CI tests with Debian?
#98 opened Jun 8, 2021 by smoe
2
remove leading and trailing whitespaces from given target list sanity_check sanity checks for robust execution - abort early with meaningful messages
#80 opened Dec 15, 2020 by alexg9010
2
Use Drimseq for differential transcript analysis enhancement wishlist
#77 opened Jul 30, 2020 by alexg9010
counts from salmon fails for single sample sanity_check sanity checks for robust execution - abort early with meaningful messages
#76 opened Jul 2, 2020 by alexg9010
1
catching missing qsub error
#70 opened Feb 3, 2020 by alexg9010
multiqc dies with large number of samples
#49 opened Nov 28, 2018 by frenkiboy
5
Integrate splicing analysis enhancement
#42 opened Aug 29, 2018 by frenkiboy
integrate RUVseq for batch correction enhancement
#40 opened Jul 8, 2018 by borauyar
@borauyar
1
set g:profiler base url reproducibility
#39 opened May 29, 2018 by borauyar
1
add disease ontology analysis module enhancement
#28 opened Mar 27, 2018 by borauyar
1
Use of Salmon leads to non-deterministic reports reproducibility
#17 opened Jan 18, 2018 by rekado
@rekado @borauyar
1
ignore case in sample sheet header sanity_check sanity checks for robust execution - abort early with meaningful messages wishlist
#6 opened Nov 9, 2017 by rekado
@rekado
2
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