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Merge pull request #909 from populationgenomics/dev
Release (family view)
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,5 @@ | ||
| #Family Individual ID Paternal ID Maternal ID Sex Affected | ||
| Fam1 Father 1 2 | ||
| Fam1 Mother 2 1 | ||
| Fam1 Child1 Father Mother 2 1 | ||
| Fam1 Child2 Father Mother 1 2 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,97 @@ | ||
| import * as React from 'react' | ||
|
|
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| import { Table as SUITable } from 'semantic-ui-react' | ||
| import { GraphQlAnalysis } from '../../__generated__/graphql' | ||
|
|
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| import Table from '../../shared/components/Table' | ||
| import AnalysisLink from '../../shared/components/links/AnalysisLink' | ||
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| export interface IAnalysisGridAnalysis extends Partial<GraphQlAnalysis> { | ||
| sgs?: string[] | ||
| } | ||
|
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| export const AnalysisGrid: React.FC<{ | ||
| analyses: IAnalysisGridAnalysis[] | ||
| participantBySgId: { [sgId: string]: { externalId: string } } | ||
| sgsById?: { [sgId: string]: { technology: string; platform: string } } | ||
| highlightedIndividual?: string | null | ||
| setAnalysisIdToView: (analysisId?: number | null) => void | ||
| showSequencingGroup?: boolean | ||
| }> = ({ | ||
| analyses, | ||
| participantBySgId, | ||
| sgsById, | ||
| highlightedIndividual, | ||
| setAnalysisIdToView, | ||
| showSequencingGroup, | ||
| }) => { | ||
| return ( | ||
| <Table> | ||
| <thead> | ||
| <SUITable.Row> | ||
| <SUITable.HeaderCell>ID</SUITable.HeaderCell> | ||
| {showSequencingGroup && ( | ||
| <SUITable.HeaderCell>Sequencing group</SUITable.HeaderCell> | ||
| )} | ||
| <SUITable.HeaderCell>Created</SUITable.HeaderCell> | ||
| <SUITable.HeaderCell>Type</SUITable.HeaderCell> | ||
| <SUITable.HeaderCell>Sequencing type</SUITable.HeaderCell> | ||
| <SUITable.HeaderCell>Sequencing technology</SUITable.HeaderCell> | ||
| <SUITable.HeaderCell>Output</SUITable.HeaderCell> | ||
| </SUITable.Row> | ||
| </thead> | ||
| <tbody> | ||
| {analyses?.map((a) => { | ||
| const sgId = a.sgs?.length === 1 ? a.sgs[0] : null | ||
| const sg = sgId ? sgsById?.[sgId] : null | ||
| return ( | ||
| <SUITable.Row | ||
| key={a.id} | ||
| style={{ | ||
| backgroundColor: a.sgs?.some( | ||
| (sg) => | ||
| !!highlightedIndividual && | ||
| participantBySgId[sg]?.externalId === highlightedIndividual | ||
| ) | ||
| ? 'var(--color-page-total-row)' | ||
| : 'var(--color-bg-card)', | ||
| }} | ||
| > | ||
| <SUITable.Cell> | ||
| <AnalysisLink | ||
| id={a.id} | ||
| onClick={(e) => { | ||
| e.preventDefault() | ||
| e.stopPropagation() | ||
| setAnalysisIdToView(a.id) | ||
| }} | ||
| /> | ||
| </SUITable.Cell> | ||
| {showSequencingGroup && ( | ||
| <SUITable.Cell> | ||
| {sg | ||
| ? sgId | ||
| : a.sgs?.map((sg) => ( | ||
| <li> | ||
| {sg}{' '} | ||
| {participantBySgId && sg in participantBySgId | ||
| ? `(${participantBySgId[sg]?.externalId})` | ||
| : ''} | ||
| </li> | ||
| ))} | ||
| </SUITable.Cell> | ||
| )} | ||
| <SUITable.Cell>{a.timestampCompleted}</SUITable.Cell> | ||
| <SUITable.Cell>{a.type}</SUITable.Cell> | ||
| <SUITable.Cell>{a.meta?.sequencing_type}</SUITable.Cell> | ||
| <SUITable.Cell> | ||
| {!!sg && `${sg?.technology} (${sg?.platform})`} | ||
| </SUITable.Cell> | ||
| <td style={{ wordBreak: 'break-all' }}>{a.output}</td> | ||
| </SUITable.Row> | ||
| ) | ||
| })} | ||
| </tbody> | ||
| </Table> | ||
| ) | ||
| } |
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