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Reference dataset metadata: thousand-genomes and hgdp #265

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@vladsavelyev vladsavelyev commented Aug 6, 2022

Harmonise and ingest metadata for the reference datasets: 1kg, HGDP, SGDP.

  • Harmonise and ingest population continental and subcontinental labels,
  • Ingest sex labels,
  • Ingest pedigree data,
  • Ingest participant IDs.

Populates the thousand-genomes (1kg) and hgdp (HGDP+SGDP) datasets.

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codecov-commenter commented Aug 6, 2022

Codecov Report

Merging #265 (8cf7880) into dev (dd2e719) will not change coverage.
The diff coverage is n/a.

@@           Coverage Diff           @@
##              dev     #265   +/-   ##
=======================================
  Coverage   63.59%   63.59%           
=======================================
  Files          65       65           
  Lines        4862     4862           
=======================================
  Hits         3092     3092           
  Misses       1770     1770           

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@vladsavelyev vladsavelyev requested a review from a team September 1, 2022 09:41
@vladsavelyev vladsavelyev changed the title Ingest thousand-genomes/hgdp metadata Ingest reference dataset metadata: thousand-genomes and hgdp Sep 1, 2022
@vladsavelyev vladsavelyev changed the title Ingest reference dataset metadata: thousand-genomes and hgdp Reference dataset metadata: thousand-genomes and hgdp Sep 1, 2022
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@lgruen lgruen left a comment

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Should we schedule a walkthrough with the population analysis team for this?

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3 participants