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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

Savitha/scdl geneformer integration
#363 opened Oct 25, 2024 by savitha-eng • Draft
5 tasks
3
Match resumption loss curve
#362 opened Oct 25, 2024 by sichu2023 Loading…
39
add devcontainer flag to ci build
#359 opened Oct 24, 2024 by pstjohn • Draft
Update VERSION - bionemo2
#352 opened Oct 23, 2024 by dorotat-nv Loading…
5 tasks
2
Fix license headers to apache. SKIP_CI
#348 opened Oct 22, 2024 by trvachov Loading…
@trvachov
2
bionemo version is set statically in one file, used throughout
#345 opened Oct 22, 2024 by malcolmgreaves Loading…
@malcolmgreaves
15
Bug Fix for SingleCellMemap Concat Function
#339 opened Oct 22, 2024 by savitha-eng Loading…
5 tasks
@savitha-eng
3
Pbinder/lazy load scdl
#332 opened Oct 19, 2024 by polinabinder1 Loading…
@polinabinder1
35
initial memleak fix attempts
#323 opened Oct 18, 2024 by pstjohn • Draft
ESM2 Distributed Inference
#319 opened Oct 17, 2024 by farhadrgh • Draft
5 tasks
Integrate SCDL with Geneformer
#317 opened Oct 16, 2024 by savitha-eng • Draft
5 tasks
add save_every_n_steps to esm2 pretraining enhancement New feature or request NOT_related_to_v24.10
#316 opened Oct 16, 2024 by sichu2023 Loading…
@sichu2023
10
Fix training resumption bug Something isn't working enhancement New feature or request NOT_related_to_v24.10
#312 opened Oct 15, 2024 by sichu2023 • Draft
19
Infer using exposed drop_last in MegatronDataSampler NOT_related_to_v24.10
#304 opened Oct 11, 2024 by farhadrgh Loading…
3
Update NeMo/Megatron NOT_related_to_v24.10
#302 opened Oct 10, 2024 by sichu2023 • Draft
3
Initial attempts to use torch.compile NOT_related_to_v24.10
#287 opened Oct 9, 2024 by pstjohn • Draft
3
documentation for an example model NOT_related_to_v24.10 SKIP_CI
#277 opened Oct 8, 2024 by polinabinder1 Loading…
@polinabinder1
8
Justfile improvements
#274 opened Oct 8, 2024 by malcolmgreaves Loading…
@malcolmgreaves
13
Internal code, infra-bionemo, new sub-package creation tool
#273 opened Oct 7, 2024 by malcolmgreaves • Draft
@malcolmgreaves
19
add global conftest and error on unfreed cuda tensors NOT_related_to_v24.10
#266 opened Oct 7, 2024 by pstjohn • Draft
1
Notebook Tests bug_fix_for_v24.10 all features going into v24.10 release both for bionemo1 and main
#265 opened Oct 7, 2024 by gagank1 Loading…
@gagank1
5
Add DNABERT custom dataset tutorial developed by Maya SKIP_CI
#264 opened Oct 7, 2024 by isabel-wilkinson Loading…
@isabel-wilkinson @mayacz22
1
add esm2 pretraining speed benchmark documentation Improvements or additions to documentation SKIP_CI
#262 opened Oct 4, 2024 by sichu2023 Loading…
@pstjohn @sichu2023
2
test
#258 opened Oct 4, 2024 by ohadmo • Draft
2
bump te to 1.10
#253 opened Oct 3, 2024 by pstjohn Loading…
@pstjohn
2
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